Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG07_RS00010 Genome accession   NZ_CP094116
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245045652.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe066     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG07_RS00005 (MPG07_00005) dnaA 1..1368 (+) 1368 WP_245045650.1 chromosomal replication initiator protein DnaA -
  MPG07_RS00010 (MPG07_00010) comH 1589..3022 (+) 1434 WP_245045652.1 competence protein Machinery gene
  MPG07_RS00020 (MPG07_00020) - 3202..3954 (+) 753 WP_245045654.1 exodeoxyribonuclease III -
  MPG07_RS00025 (MPG07_00025) - 3951..4586 (-) 636 WP_000668030.1 outer membrane protein -
  MPG07_RS00030 (MPG07_00030) - 4590..4943 (-) 354 WP_000837005.1 hypothetical protein -
  MPG07_RS00035 (MPG07_00035) recG 5025..6890 (+) 1866 WP_245045656.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54704.56 Da        Isoelectric Point: 7.4069

>NTDB_id=667063 MPG07_RS00010 WP_245045652.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe066]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPLAT
PSKTSSANEVKTPTNDTKLPLKHSSEDQENNLFVTPPTEKTLPNNTPNANINEHNESNENRDNGEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTTTDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSF
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNELKL
DNKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=667063 MPG07_RS00010 WP_245045652.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe066]
ATGAAAAAAACCCTTTGTCTTTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAGCTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCCAACCGCCCTACTATCCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCAGCTCATCGCAACAAT
CCCCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTAGCAACT
CCTAGCAAAACAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACTCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATATTAATGAAC
ACAATGAAAGCAATGAGAATAGGGATAATGGGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCATGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTAC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTTT
ACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTCAAGCAAAACGAATTAAAATTA
GATAACAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACACCCTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.232

100

0.916

Multiple sequence alignment