Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG80_RS07000 Genome accession   NZ_CP094115
Coordinates   1472680..1472961 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe068     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467680..1477961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG80_RS06980 (MPG80_06980) - 1468391..1469731 (-) 1341 WP_245055468.1 hypothetical protein -
  MPG80_RS06990 (MPG80_06990) comB4 1470051..1472414 (-) 2364 WP_245055470.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG80_RS06995 (MPG80_06995) comB3 1472417..1472680 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG80_RS07000 (MPG80_07000) comB2 1472680..1472961 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG80_RS07005 (MPG80_07005) - 1473107..1473934 (-) 828 WP_245055472.1 DUF5718 family protein -
  MPG80_RS07010 (MPG80_07010) - 1474025..1475077 (-) 1053 WP_120944380.1 MnmA/TRMU family protein -
  MPG80_RS07015 (MPG80_07015) dnaG 1475074..1476753 (-) 1680 WP_245055474.1 DNA primase -
  MPG80_RS07020 (MPG80_07020) groES 1477028..1477384 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667062 MPG80_RS07000 WP_001272686.1 1472680..1472961(-) (comB2) [Helicobacter pylori strain Hpfe068]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667062 MPG80_RS07000 WP_001272686.1 1472680..1472961(-) (comB2) [Helicobacter pylori strain Hpfe068]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment