Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG80_RS06995 | Genome accession | NZ_CP094115 |
| Coordinates | 1472417..1472680 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain Hpfe068 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1467417..1477680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG80_RS06980 (MPG80_06980) | - | 1468391..1469731 (-) | 1341 | WP_245055468.1 | hypothetical protein | - |
| MPG80_RS06990 (MPG80_06990) | comB4 | 1470051..1472414 (-) | 2364 | WP_245055470.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| MPG80_RS06995 (MPG80_06995) | comB3 | 1472417..1472680 (-) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| MPG80_RS07000 (MPG80_07000) | comB2 | 1472680..1472961 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG80_RS07005 (MPG80_07005) | - | 1473107..1473934 (-) | 828 | WP_245055472.1 | DUF5718 family protein | - |
| MPG80_RS07010 (MPG80_07010) | - | 1474025..1475077 (-) | 1053 | WP_120944380.1 | MnmA/TRMU family protein | - |
| MPG80_RS07015 (MPG80_07015) | dnaG | 1475074..1476753 (-) | 1680 | WP_245055474.1 | DNA primase | - |
| MPG80_RS07020 (MPG80_07020) | groES | 1477028..1477384 (+) | 357 | WP_000671953.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=667061 MPG80_RS06995 WP_000584955.1 1472417..1472680(-) (comB3) [Helicobacter pylori strain Hpfe068]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=667061 MPG80_RS06995 WP_000584955.1 1472417..1472680(-) (comB3) [Helicobacter pylori strain Hpfe068]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |