Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG80_RS05360 Genome accession   NZ_CP094115
Coordinates   1131421..1131825 (-) Length   134 a.a.
NCBI ID   WP_220873955.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126421..1136825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG80_RS05315 (MPG80_05315) - 1126582..1127685 (-) 1104 WP_245055116.1 hypothetical protein -
  MPG80_RS05320 (MPG80_05320) - 1127675..1128460 (-) 786 WP_245055118.1 hypothetical protein -
  MPG80_RS05325 (MPG80_05325) - 1128460..1128846 (-) 387 WP_245055121.1 DUF1294 domain-containing protein -
  MPG80_RS05330 (MPG80_05330) - 1129163..1129324 (-) 162 WP_245055123.1 lysozyme -
  MPG80_RS05335 (MPG80_05335) - 1129344..1129490 (-) 147 WP_238700059.1 hypothetical protein -
  MPG80_RS05340 (MPG80_05340) - 1129507..1129845 (-) 339 WP_245055125.1 lysozyme -
  MPG80_RS05345 (MPG80_05345) - 1129856..1130416 (-) 561 WP_245055127.1 hypothetical protein -
  MPG80_RS05350 (MPG80_05350) - 1130400..1130738 (-) 339 WP_000699916.1 hypothetical protein -
  MPG80_RS05355 (MPG80_05355) - 1130927..1131289 (-) 363 WP_245055128.1 tetratricopeptide repeat protein -
  MPG80_RS05360 (MPG80_05360) dprB 1131421..1131825 (-) 405 WP_220873955.1 Holliday junction resolvase RuvX Machinery gene
  MPG80_RS05365 (MPG80_05365) dprA 1131822..1132622 (-) 801 WP_245055130.1 DNA-processing protein DprA Machinery gene
  MPG80_RS05370 (MPG80_05370) minE 1132634..1132867 (-) 234 WP_120992212.1 cell division topological specificity factor MinE -
  MPG80_RS05375 (MPG80_05375) minD 1132864..1133670 (-) 807 WP_231228561.1 septum site-determining protein MinD -
  MPG80_RS05380 (MPG80_05380) ilvC 1133695..1134687 (-) 993 WP_245056312.1 ketol-acid reductoisomerase -
  MPG80_RS05390 (MPG80_05390) - 1134936..1135718 (+) 783 WP_245055132.1 NAD+ synthase -
  MPG80_RS05395 (MPG80_05395) - 1135715..1136653 (+) 939 WP_245055134.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15207.75 Da        Isoelectric Point: 9.8304

>NTDB_id=667054 MPG80_RS05360 WP_220873955.1 1131421..1131825(-) (dprB) [Helicobacter pylori strain Hpfe068]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667054 MPG80_RS05360 WP_220873955.1 1131421..1131825(-) (dprB) [Helicobacter pylori strain Hpfe068]
GTGATTTTGGCATGCGATGTGGGCTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment