Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG48_RS07105 Genome accession   NZ_CP094113
Coordinates   1482602..1482883 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe069     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477602..1487883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG48_RS07085 (MPG48_07085) - 1478313..1479653 (-) 1341 WP_245065231.1 hypothetical protein -
  MPG48_RS07095 (MPG48_07095) comB4 1479974..1482337 (-) 2364 WP_245065232.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG48_RS07100 (MPG48_07100) comB3 1482339..1482602 (-) 264 WP_180398559.1 competence protein ComB Machinery gene
  MPG48_RS07105 (MPG48_07105) comB2 1482602..1482883 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG48_RS07110 (MPG48_07110) - 1483028..1483855 (-) 828 WP_180473870.1 DUF5718 family protein -
  MPG48_RS07115 (MPG48_07115) - 1483945..1484997 (-) 1053 WP_245065234.1 MnmA/TRMU family protein -
  MPG48_RS07120 (MPG48_07120) dnaG 1484994..1486673 (-) 1680 WP_245065236.1 DNA primase -
  MPG48_RS07125 (MPG48_07125) groES 1486946..1487302 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=667041 MPG48_RS07105 WP_001272686.1 1482602..1482883(-) (comB2) [Helicobacter pylori strain Hpfe069]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=667041 MPG48_RS07105 WP_001272686.1 1482602..1482883(-) (comB2) [Helicobacter pylori strain Hpfe069]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTTTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment