Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG48_RS05525 Genome accession   NZ_CP094113
Coordinates   1159286..1159690 (-) Length   134 a.a.
NCBI ID   WP_180398416.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1154286..1164690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG48_RS05485 (MPG48_05485) - 1154418..1155539 (-) 1122 WP_245064905.1 hypothetical protein -
  MPG48_RS05490 (MPG48_05490) - 1155529..1156314 (-) 786 WP_245064907.1 hypothetical protein -
  MPG48_RS05495 (MPG48_05495) - 1156314..1156700 (-) 387 WP_245064909.1 DUF1294 domain-containing protein -
  MPG48_RS05500 (MPG48_05500) - 1157029..1157190 (-) 162 WP_229763027.1 lysozyme -
  MPG48_RS05505 (MPG48_05505) - 1157210..1157710 (-) 501 WP_245064911.1 glycoside hydrolase family protein -
  MPG48_RS05510 (MPG48_05510) - 1157721..1158281 (-) 561 WP_245064912.1 hypothetical protein -
  MPG48_RS05515 (MPG48_05515) - 1158265..1158603 (-) 339 WP_000699916.1 hypothetical protein -
  MPG48_RS05520 (MPG48_05520) - 1158899..1159228 (-) 330 WP_245064913.1 tetratricopeptide repeat protein -
  MPG48_RS05525 (MPG48_05525) dprB 1159286..1159690 (-) 405 WP_180398416.1 Holliday junction resolvase RuvX Machinery gene
  MPG48_RS05530 (MPG48_05530) dprA 1159687..1160487 (-) 801 WP_245064914.1 DNA-processing protein DprA Machinery gene
  MPG48_RS05535 (MPG48_05535) minE 1160499..1160732 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG48_RS05540 (MPG48_05540) minD 1160729..1161535 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG48_RS05545 (MPG48_05545) ilvC 1161559..1162551 (-) 993 WP_245064915.1 ketol-acid reductoisomerase -
  MPG48_RS05555 (MPG48_05555) - 1162800..1163582 (+) 783 WP_245064916.1 NAD+ synthase -
  MPG48_RS05560 (MPG48_05560) - 1163579..1164517 (+) 939 WP_245064917.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15372.87 Da        Isoelectric Point: 9.1723

>NTDB_id=667033 MPG48_RS05525 WP_180398416.1 1159286..1159690(-) (dprB) [Helicobacter pylori strain Hpfe069]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESYTDTNARIESFIKRLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667033 MPG48_RS05525 WP_180398416.1 1159286..1159690(-) (dprB) [Helicobacter pylori strain Hpfe069]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTGCCCTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGTAAGCCCCATGAAAGCTATACGGACACGAACGCGCGCATTGAATCTTTCATCAAGCGTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment