Detailed information NTG0667029

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG48_RS02390
• Genome accession: NZ_CP094113
• Coordinates: 478225..479427 (+)
• Length: 400 a.a.
• NCBI ID: WP_245065633.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe069
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 473225..484427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG48_RS02375 (MPG48_02375)	-	475277..475411 (+)	135	WP_000738749.1	hypothetical protein	-
MPG48_RS02380 (MPG48_02380)	-	475404..476573 (+)	1170	WP_245065629.1	VirB8/TrbF family protein	-
MPG48_RS02385 (MPG48_02385)	-	476570..478228 (+)	1659	WP_245065631.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG48_RS02390 (MPG48_02390)	comB10	478225..479427 (+)	1203	WP_245065633.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG48_RS02395 (MPG48_02395)	-	479411..481672 (+)	2262	Protein_463	collagen-like protein	-
MPG48_RS02400 (MPG48_02400)	-	481685..482662 (+)	978	WP_245065635.1	hypothetical protein	-
MPG48_RS02405 (MPG48_02405)	-	482680..482952 (+)	273	WP_245065637.1	hypothetical protein	-
MPG48_RS02410 (MPG48_02410)	-	482957..483901 (+)	945	WP_096397346.1	CpaF/VirB11 family protein	-
MPG48_RS02415 (MPG48_02415)	-	483898..484416 (+)	519	WP_245065638.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44834.51 Da
• Isoelectric Point: 9.9996

>NTDB_id=667029 MPG48_RS02390 WP_245065633.1 478225..479427(+) (comB10) [Helicobacter pylori strain Hpfe069]
MKQSLLKKIGLVIGGFGALMALGLLANKDSNNNNKEEIFQVNESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPINSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLVEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=667029 MPG48_RS02390 WP_245065633.1 478225..479427(+) (comB10) [Helicobacter pylori strain Hpfe069]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGATTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAATGAGAGTAAATTCCCACTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTACAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACGATTACGGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAATTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGTGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.672	98.25	0.518