Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | MPG48_RS02360 | Genome accession | NZ_CP094113 |
| Coordinates | 472189..472452 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177715.1 | Uniprot ID | A0A6J4CYM2 |
| Organism | Helicobacter pylori strain Hpfe069 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 467189..477452
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG48_RS02335 (MPG48_02335) | - | 468484..469413 (-) | 930 | WP_245065623.1 | hypothetical protein | - |
| MPG48_RS02340 (MPG48_02340) | - | 469519..470343 (-) | 825 | Protein_452 | hypothetical protein | - |
| MPG48_RS02345 (MPG48_02345) | - | 470643..471431 (+) | 789 | WP_245065625.1 | integrase | - |
| MPG48_RS02350 (MPG48_02350) | - | 471535..471897 (+) | 363 | WP_245065627.1 | hypothetical protein | - |
| MPG48_RS02355 (MPG48_02355) | comB2 | 471894..472178 (+) | 285 | WP_000736106.1 | TrbC/VirB2 family protein | Machinery gene |
| MPG48_RS02360 (MPG48_02360) | comB3 | 472189..472452 (+) | 264 | WP_001177715.1 | hypothetical protein | Machinery gene |
| MPG48_RS02365 (MPG48_02365) | - | 472463..472699 (+) | 237 | WP_001183709.1 | hypothetical protein | - |
| MPG48_RS02370 (MPG48_02370) | - | 472699..475280 (+) | 2582 | Protein_458 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| MPG48_RS02375 (MPG48_02375) | - | 475277..475411 (+) | 135 | WP_000738749.1 | hypothetical protein | - |
| MPG48_RS02380 (MPG48_02380) | - | 475404..476573 (+) | 1170 | WP_245065629.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=667028 MPG48_RS02360 WP_001177715.1 472189..472452(+) (comB3) [Helicobacter pylori strain Hpfe069]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=667028 MPG48_RS02360 WP_001177715.1 472189..472452(+) (comB3) [Helicobacter pylori strain Hpfe069]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGCTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTGTGCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGCTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTGTGCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
59.77 |
100 |
0.598 |