Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG48_RS02355 Genome accession   NZ_CP094113
Coordinates   471894..472178 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori strain Hpfe069     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466894..477178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG48_RS02335 (MPG48_02335) - 468484..469413 (-) 930 WP_245065623.1 hypothetical protein -
  MPG48_RS02340 (MPG48_02340) - 469519..470343 (-) 825 Protein_452 hypothetical protein -
  MPG48_RS02345 (MPG48_02345) - 470643..471431 (+) 789 WP_245065625.1 integrase -
  MPG48_RS02350 (MPG48_02350) - 471535..471897 (+) 363 WP_245065627.1 hypothetical protein -
  MPG48_RS02355 (MPG48_02355) comB2 471894..472178 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  MPG48_RS02360 (MPG48_02360) comB3 472189..472452 (+) 264 WP_001177715.1 hypothetical protein Machinery gene
  MPG48_RS02365 (MPG48_02365) - 472463..472699 (+) 237 WP_001183709.1 hypothetical protein -
  MPG48_RS02370 (MPG48_02370) - 472699..475280 (+) 2582 Protein_458 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPG48_RS02375 (MPG48_02375) - 475277..475411 (+) 135 WP_000738749.1 hypothetical protein -
  MPG48_RS02380 (MPG48_02380) - 475404..476573 (+) 1170 WP_245065629.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=667027 MPG48_RS02355 WP_000736106.1 471894..472178(+) (comB2) [Helicobacter pylori strain Hpfe069]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=667027 MPG48_RS02355 WP_000736106.1 471894..472178(+) (comB2) [Helicobacter pylori strain Hpfe069]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment