Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG22_RS06970 Genome accession   NZ_CP094111
Coordinates   1451409..1452722 (-) Length   437 a.a.
NCBI ID   WP_245065207.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe070     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446409..1457722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG22_RS06940 (MPG22_06940) nadC 1446872..1447693 (-) 822 WP_128038945.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG22_RS06945 (MPG22_06945) nadA 1447693..1448703 (-) 1011 WP_245065201.1 quinolinate synthase NadA -
  MPG22_RS06950 (MPG22_06950) - 1448693..1449496 (-) 804 WP_245065203.1 phosphatidylserine decarboxylase -
  MPG22_RS06955 (MPG22_06955) - 1449493..1449996 (-) 504 WP_000953083.1 hypothetical protein -
  MPG22_RS06960 (MPG22_06960) - 1450009..1450503 (-) 495 WP_245065205.1 hypothetical protein -
  MPG22_RS06965 (MPG22_06965) mqnP 1450496..1451380 (-) 885 WP_001919002.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG22_RS06970 (MPG22_06970) comEC/comE3 1451409..1452722 (-) 1314 WP_245065207.1 ComEC/Rec2 family competence protein Machinery gene
  MPG22_RS06975 (MPG22_06975) - 1452719..1454179 (-) 1461 WP_245065209.1 replicative DNA helicase -
  MPG22_RS06980 (MPG22_06980) - 1454190..1455584 (-) 1395 WP_245065211.1 NAD(P)H-hydrate dehydratase -
  MPG22_RS06985 (MPG22_06985) crdS 1455587..1456789 (-) 1203 WP_245065996.1 copper-sensing histidine kinase CrdS -
  MPG22_RS06990 (MPG22_06990) crdR 1456755..1457396 (-) 642 WP_245065213.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50018.96 Da        Isoelectric Point: 9.8315

>NTDB_id=667014 MPG22_RS06970 WP_245065207.1 1451409..1452722(-) (comEC/comE3) [Helicobacter pylori strain Hpfe070]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQVLLQYPKTKDQKTYFVLKLQSKGII
FYATIKEPLKNLQYRYAQFFGKIKPCSFLEPLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSTLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667014 MPG22_RS06970 WP_245065207.1 1451409..1452722(-) (comEC/comE3) [Helicobacter pylori strain Hpfe070]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAGTCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATAATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGCCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGACTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment