Detailed information NTG0667010

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG214_RS04340
• Genome accession: NZ_CP108806
• Coordinates: 1005536..1006822 (-)
• Length: 428 a.a.
• NCBI ID: WP_405983836.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00872
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1000536..1011822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG214_RS04320 (OG214_04335)	-	1001135..1001875 (-)	741	WP_405983833.1	cupin domain-containing protein	-
OG214_RS04325 (OG214_04340)	-	1002007..1002483 (-)	477	WP_405983834.1	ATP-binding protein	-
OG214_RS04330 (OG214_04345)	-	1002720..1003553 (+)	834	WP_363085433.1	alpha/beta hydrolase	-
OG214_RS04335 (OG214_04350)	nhaA	1003567..1005453 (-)	1887	WP_405983835.1	Na+/H+ antiporter NhaA	-
OG214_RS04340 (OG214_04355)	clpX	1005536..1006822 (-)	1287	WP_405983836.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG214_RS04345 (OG214_04360)	-	1006963..1008186 (+)	1224	WP_405983837.1	TetR/AcrR family transcriptional regulator	-
OG214_RS04350 (OG214_04365)	-	1008396..1010639 (-)	2244	WP_405983838.1	M4 family metallopeptidase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46225.02 Da
• Isoelectric Point: 5.1505

>NTDB_id=667010 OG214_RS04340 WP_405983836.1 1005536..1006822(-) (clpX) [Streptomyces sp. NBC_00872]
MAGIGDGGTLLKCTFCGKNQKQVQKLIAGPSPVCICDECVGLCNELIAEDLGAPSGDALPDLPKPREIFDFLGQYVIGQE
SAKRTLAVAVYNHYKRVGSMARGGGRPSSGEEQVELGKSNILLVGPTGCGKTYLVQTLARMLDVPFAIADATALTEAGYV
GEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKGENRSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHSQQE
FIQIDTANVLFIVGGAFAGLEQIVEQRVGRQGIGFGASIHSKEEREGRTASADVLPEDLLKFGLIPELVGRLPKLATVQP
LDRTALTRILTEPRNALLKQYQKLFDLDGVELEFTEDAVAAVAEQALLRRTGARAARTILEEVLLNVMYEVPSRDDVARV
VVDRATVLDNVNPTLVPRGKRERREKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=667010 OG214_RS04340 WP_405983836.1 1005536..1006822(-) (clpX) [Streptomyces sp. NBC_00872]
GTGGCAGGCATCGGTGACGGCGGCACCCTGCTGAAGTGCACGTTCTGCGGGAAGAACCAGAAGCAGGTCCAGAAGCTGAT
CGCGGGTCCGAGCCCGGTCTGCATCTGCGACGAGTGTGTGGGGCTCTGCAACGAGCTGATCGCCGAGGACCTCGGCGCGC
CCTCCGGGGACGCGCTGCCGGATCTTCCGAAACCGCGCGAGATCTTCGACTTCCTGGGGCAGTACGTCATCGGGCAGGAG
AGCGCCAAGAGGACACTCGCGGTGGCGGTCTACAACCACTACAAACGCGTCGGATCGATGGCCCGCGGCGGCGGGCGGCC
GAGCTCCGGCGAGGAACAGGTCGAACTCGGCAAGTCCAACATCCTGCTGGTCGGTCCGACCGGCTGCGGCAAGACCTATC
TCGTCCAGACCCTCGCCCGGATGCTCGACGTCCCGTTCGCGATCGCCGACGCCACCGCGCTCACGGAGGCCGGCTATGTG
GGGGAGGACGTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCAT
CTACATCGACGAGATCGACAAGGTCGCCCGCAAGGGCGAGAACCGTTCGATCACCCGCGATGTCTCCGGCGAGGGCGTCC
AGCAGGCGCTGCTGAAGATCCTGGAGGGCACGGTCGCCGCCGTGCCGCCGCAGGGCGGCCGTAAGCACTCGCAGCAGGAG
TTCATCCAGATCGACACGGCCAATGTGCTGTTCATCGTCGGCGGTGCCTTCGCCGGTCTGGAGCAGATCGTCGAACAGCG
CGTCGGACGCCAGGGCATCGGATTCGGCGCCTCGATCCACAGCAAGGAGGAGCGGGAGGGCCGGACCGCCTCCGCCGATG
TGCTGCCGGAGGATCTGCTGAAGTTCGGACTGATCCCGGAACTGGTCGGCCGGCTGCCGAAGCTGGCGACCGTTCAGCCG
CTGGACCGGACCGCGCTGACCCGTATCCTCACCGAGCCGCGCAACGCGCTGCTCAAGCAGTACCAGAAGCTCTTCGACCT
CGACGGGGTGGAGCTGGAGTTCACCGAGGACGCCGTCGCCGCCGTCGCCGAACAGGCGCTGCTGCGCCGCACCGGTGCCC
GCGCGGCGCGCACGATCCTCGAAGAGGTCCTGCTGAACGTGATGTACGAGGTCCCCAGCAGGGACGATGTCGCCCGTGTC
GTGGTCGACCGCGCCACCGTGCTCGACAACGTCAATCCGACGCTCGTACCGCGCGGAAAGCGCGAGCGCCGCGAGAAGTC
CGCCTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (118-314)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (321-398)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.036	96.963	0.572
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.879	96.495	0.481