Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG24_RS07090 Genome accession   NZ_CP094110
Coordinates   1488421..1489734 (-) Length   437 a.a.
NCBI ID   WP_245104056.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe071     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483421..1494734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS07060 (MPG24_07060) nadC 1483884..1484705 (-) 822 WP_245104048.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG24_RS07065 (MPG24_07065) nadA 1484705..1485715 (-) 1011 WP_245104050.1 quinolinate synthase NadA -
  MPG24_RS07070 (MPG24_07070) - 1485705..1486508 (-) 804 WP_245104052.1 phosphatidylserine decarboxylase -
  MPG24_RS07075 (MPG24_07075) - 1486505..1487008 (-) 504 WP_000953083.1 hypothetical protein -
  MPG24_RS07080 (MPG24_07080) - 1487021..1487515 (-) 495 WP_180461827.1 hypothetical protein -
  MPG24_RS07085 (MPG24_07085) mqnP 1487508..1488350 (-) 843 WP_245104054.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG24_RS07090 (MPG24_07090) comEC/comE3 1488421..1489734 (-) 1314 WP_245104056.1 ComEC/Rec2 family competence protein Machinery gene
  MPG24_RS07095 (MPG24_07095) - 1489731..1491191 (-) 1461 WP_245104058.1 replicative DNA helicase -
  MPG24_RS07100 (MPG24_07100) - 1491202..1492596 (-) 1395 WP_245104060.1 NAD(P)H-hydrate dehydratase -
  MPG24_RS07105 (MPG24_07105) crdS 1492599..1493801 (-) 1203 WP_245104996.1 copper-sensing histidine kinase CrdS -
  MPG24_RS07110 (MPG24_07110) crdR 1493767..1494408 (-) 642 WP_245104062.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50161.08 Da        Isoelectric Point: 9.9160

>NTDB_id=666991 MPG24_RS07090 WP_245104056.1 1488421..1489734(-) (comEC/comE3) [Helicobacter pylori strain Hpfe071]
MKDKTFQGAFELLTTPKEYLLYGVVLSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSRALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666991 MPG24_RS07090 WP_245104056.1 1488421..1489734(-) (comEC/comE3) [Helicobacter pylori strain Hpfe071]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTATGGGGTTGTTTTAAG
CCTTTTGTTGGTGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGAGCTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGT
GCACTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95