Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG24_RS05515 Genome accession   NZ_CP094110
Coordinates   1174213..1174617 (-) Length   134 a.a.
NCBI ID   WP_245103755.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1169213..1179617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS05480 (MPG24_05480) - 1169292..1170380 (-) 1089 WP_245103749.1 hypothetical protein -
  MPG24_RS05485 (MPG24_05485) - 1170370..1171154 (-) 785 Protein_1070 hypothetical protein -
  MPG24_RS05490 (MPG24_05490) - 1171154..1171540 (-) 387 WP_050835084.1 DUF1294 domain-containing protein -
  MPG24_RS07790 - 1171862..1172023 (-) 162 Protein_1072 lysozyme -
  MPG24_RS05495 (MPG24_05495) - 1172043..1172543 (-) 501 WP_245103751.1 glycoside hydrolase family protein -
  MPG24_RS05500 (MPG24_05500) - 1172554..1173114 (-) 561 WP_245103753.1 hypothetical protein -
  MPG24_RS05505 (MPG24_05505) - 1173098..1173436 (-) 339 WP_017280149.1 hypothetical protein -
  MPG24_RS05510 (MPG24_05510) - 1173567..1174082 (-) 516 WP_245104976.1 tetratricopeptide repeat protein -
  MPG24_RS05515 (MPG24_05515) dprB 1174213..1174617 (-) 405 WP_245103755.1 Holliday junction resolvase RuvX Machinery gene
  MPG24_RS05520 (MPG24_05520) dprA 1174614..1175414 (-) 801 WP_245103757.1 DNA-processing protein DprA Machinery gene
  MPG24_RS05525 (MPG24_05525) minE 1175426..1175659 (-) 234 WP_212874147.1 cell division topological specificity factor MinE -
  MPG24_RS05530 (MPG24_05530) minD 1175656..1176462 (-) 807 WP_121296737.1 septum site-determining protein MinD -
  MPG24_RS05535 (MPG24_05535) ilvC 1176486..1177478 (-) 993 WP_245103759.1 ketol-acid reductoisomerase -
  MPG24_RS05545 (MPG24_05545) - 1177727..1178509 (+) 783 WP_245103761.1 NAD+ synthase -
  MPG24_RS05550 (MPG24_05550) - 1178506..1179444 (+) 939 WP_245103763.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15314.76 Da        Isoelectric Point: 9.0345

>NTDB_id=666987 MPG24_RS05515 WP_245103755.1 1174213..1174617(-) (dprB) [Helicobacter pylori strain Hpfe071]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGWLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666987 MPG24_RS05515 WP_245103755.1 1174213..1174617(-) (dprB) [Helicobacter pylori strain Hpfe071]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCCGCACTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATACGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCTGGCTAGACTCTTTGAGCGCTTGCAGAATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933