Detailed information NTG0666980

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG24_RS02785
• Genome accession: NZ_CP094110
• Coordinates: 587200..588402 (-)
• Length: 400 a.a.
• NCBI ID: WP_245104695.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe071
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 582200..593402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG24_RS02760 (MPG24_02760)	-	582211..582729 (-)	519	WP_180483180.1	replication regulatory RepB family protein	-
MPG24_RS02765 (MPG24_02765)	-	582726..583670 (-)	945	WP_245104687.1	CpaF/VirB11 family protein	-
MPG24_RS02770 (MPG24_02770)	-	583675..583947 (-)	273	WP_245104689.1	hypothetical protein	-
MPG24_RS02775 (MPG24_02775)	-	583965..584942 (-)	978	WP_245104691.1	hypothetical protein	-
MPG24_RS02780 (MPG24_02780)	-	584955..587216 (-)	2262	WP_245104693.1	collagen-like protein	-
MPG24_RS02785 (MPG24_02785)	comB10	587200..588402 (-)	1203	WP_245104695.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG24_RS02790 (MPG24_02790)	-	588399..590067 (-)	1669	Protein_535	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG24_RS02795 (MPG24_02795)	-	590064..591233 (-)	1170	WP_245104697.1	VirB8/TrbF family protein	-
MPG24_RS02800 (MPG24_02800)	-	591226..591360 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44688.35 Da
• Isoelectric Point: 9.9575

>NTDB_id=666980 MPG24_RS02785 WP_245104695.1 587200..588402(-) (comB10) [Helicobacter pylori strain Hpfe071]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKSLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADKMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGNGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFISKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=666980 MPG24_RS02785 WP_245104695.1 587200..588402(-) (comB10) [Helicobacter pylori strain Hpfe071]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAATCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAAAATGATACCCGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACTGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACGATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTAATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCTCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.417	98.25	0.515