Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG24_RS00705 Genome accession   NZ_CP094110
Coordinates   149776..150519 (+) Length   247 a.a.
NCBI ID   WP_245104316.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe071     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144776..155519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS00680 (MPG24_00680) panD 146928..147278 (+) 351 WP_245104314.1 aspartate 1-decarboxylase -
  MPG24_RS00685 (MPG24_00685) - 147289..147582 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG24_RS00690 (MPG24_00690) - 147582..148577 (+) 996 WP_245104921.1 PDZ domain-containing protein -
  MPG24_RS00695 (MPG24_00695) comB6 148583..149638 (+) 1056 WP_245104923.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG24_RS00700 (MPG24_00700) comB7 149654..149779 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG24_RS00705 (MPG24_00705) comB8 149776..150519 (+) 744 WP_245104316.1 virB8 family protein Machinery gene
  MPG24_RS00710 (MPG24_00710) comB9 150519..151481 (+) 963 WP_245104318.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG24_RS00715 (MPG24_00715) comB10 151474..152610 (+) 1137 WP_245030629.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG24_RS00720 (MPG24_00720) - 152680..154092 (+) 1413 WP_245104320.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG24_RS00725 (MPG24_00725) gmd 154107..155252 (+) 1146 WP_245104323.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.96 Da        Isoelectric Point: 9.2537

>NTDB_id=666976 MPG24_RS00705 WP_245104316.1 149776..150519(+) (comB8) [Helicobacter pylori strain Hpfe071]
MKEKPFNSEQLIYLEELLSHKEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666976 MPG24_RS00705 WP_245104316.1 149776..150519(+) (comB8) [Helicobacter pylori strain Hpfe071]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACAAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGGTTAGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCCCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGTTGGTGTATGAAAAGCGTTATAAAATTGTGCTGAGTTATTTGTTTG
ACACCCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968