Detailed information NTG0666974

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG24_RS00695
• Genome accession: NZ_CP094110
• Coordinates: 148583..149638 (+)
• Length: 351 a.a.
• NCBI ID: WP_245104923.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe071
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 143583..154638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG24_RS00665 (MPG24_00665)	-	144004..144417 (+)	414	WP_001023005.1	universal stress protein	-
MPG24_RS00670 (MPG24_00670)	-	144438..144713 (+)	276	WP_154491796.1	ATP-dependent Clp protease adaptor ClpS	-
MPG24_RS00675 (MPG24_00675)	-	144713..146938 (+)	2226	WP_245104312.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG24_RS00680 (MPG24_00680)	panD	146928..147278 (+)	351	WP_245104314.1	aspartate 1-decarboxylase	-
MPG24_RS00685 (MPG24_00685)	-	147289..147582 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG24_RS00690 (MPG24_00690)	-	147582..148577 (+)	996	WP_245104921.1	PDZ domain-containing protein	-
MPG24_RS00695 (MPG24_00695)	comB6	148583..149638 (+)	1056	WP_245104923.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG24_RS00700 (MPG24_00700)	comB7	149654..149779 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG24_RS00705 (MPG24_00705)	comB8	149776..150519 (+)	744	WP_245104316.1	virB8 family protein	Machinery gene
MPG24_RS00710 (MPG24_00710)	comB9	150519..151481 (+)	963	WP_245104318.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG24_RS00715 (MPG24_00715)	comB10	151474..152610 (+)	1137	WP_245030629.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG24_RS00720 (MPG24_00720)	-	152680..154092 (+)	1413	WP_245104320.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39885.86 Da
• Isoelectric Point: 8.8041

>NTDB_id=666974 MPG24_RS00695 WP_245104923.1 148583..149638(+) (comB6) [Helicobacter pylori strain Hpfe071]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEISVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETYSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666974 MPG24_RS00695 WP_245104923.1 148583..149638(+) (comB6) [Helicobacter pylori strain Hpfe071]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAATCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATATCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAGACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGTATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96