Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG41_RS06980 Genome accession   NZ_CP094109
Coordinates   1479089..1480402 (-) Length   437 a.a.
NCBI ID   WP_245067797.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe072     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1474089..1485402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG41_RS06950 (MPG41_06950) nadC 1474552..1475373 (-) 822 WP_245067791.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG41_RS06955 (MPG41_06955) nadA 1475373..1476383 (-) 1011 WP_001141983.1 quinolinate synthase NadA -
  MPG41_RS06960 (MPG41_06960) - 1476370..1477176 (-) 807 WP_245067793.1 phosphatidylserine decarboxylase -
  MPG41_RS06965 (MPG41_06965) - 1477173..1477676 (-) 504 WP_000953083.1 hypothetical protein -
  MPG41_RS06970 (MPG41_06970) - 1477689..1478183 (-) 495 WP_014537179.1 hypothetical protein -
  MPG41_RS06975 (MPG41_06975) mqnP 1478176..1479060 (-) 885 WP_245067795.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG41_RS06980 (MPG41_06980) comEC/comE3 1479089..1480402 (-) 1314 WP_245067797.1 ComEC/Rec2 family competence protein Machinery gene
  MPG41_RS06985 (MPG41_06985) - 1480399..1481865 (-) 1467 WP_245067799.1 replicative DNA helicase -
  MPG41_RS06990 (MPG41_06990) - 1481876..1483270 (-) 1395 WP_245067801.1 NAD(P)H-hydrate dehydratase -
  MPG41_RS06995 (MPG41_06995) crdS 1483273..1484475 (-) 1203 WP_180604690.1 copper-sensing histidine kinase CrdS -
  MPG41_RS07000 (MPG41_07000) crdR 1484441..1485082 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50095.08 Da        Isoelectric Point: 9.8860

>NTDB_id=666967 MPG41_RS06980 WP_245067797.1 1479089..1480402(-) (comEC/comE3) [Helicobacter pylori strain Hpfe072]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANVLGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666967 MPG41_RS06980 WP_245067797.1 1479089..1480402(-) (comEC/comE3) [Helicobacter pylori strain Hpfe072]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTGGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAGACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGTGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTCTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGTGCACGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945