Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG41_RS05405 Genome accession   NZ_CP094109
Coordinates   1141143..1141547 (-) Length   134 a.a.
NCBI ID   WP_245067491.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136143..1146547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG41_RS05360 (MPG41_05360) - 1136352..1137415 (-) 1064 Protein_1045 hypothetical protein -
  MPG41_RS05365 (MPG41_05365) - 1137405..1138190 (-) 786 Protein_1046 hypothetical protein -
  MPG41_RS05370 (MPG41_05370) - 1138190..1138576 (-) 387 WP_245067485.1 DUF1294 domain-containing protein -
  MPG41_RS05375 (MPG41_05375) - 1138662..1138865 (-) 204 WP_245068595.1 hypothetical protein -
  MPG41_RS05380 (MPG41_05380) - 1138915..1139076 (-) 162 WP_229764454.1 lysozyme -
  MPG41_RS05385 (MPG41_05385) - 1139096..1139590 (-) 495 WP_245067487.1 lysozyme -
  MPG41_RS05390 (MPG41_05390) - 1139601..1140161 (-) 561 WP_220822583.1 hypothetical protein -
  MPG41_RS05395 (MPG41_05395) - 1140145..1140483 (-) 339 WP_000699911.1 hypothetical protein -
  MPG41_RS05400 (MPG41_05400) - 1140706..1141020 (-) 315 WP_245067489.1 tetratricopeptide repeat protein -
  MPG41_RS05405 (MPG41_05405) dprB 1141143..1141547 (-) 405 WP_245067491.1 Holliday junction resolvase RuvX Machinery gene
  MPG41_RS05410 (MPG41_05410) dprA 1141544..1142344 (-) 801 WP_245067492.1 DNA-processing protein DprA Machinery gene
  MPG41_RS05415 (MPG41_05415) minE 1142356..1142589 (-) 234 WP_021304603.1 cell division topological specificity factor MinE -
  MPG41_RS05420 (MPG41_05420) minD 1142586..1143392 (-) 807 WP_245067493.1 septum site-determining protein MinD -
  MPG41_RS05425 (MPG41_05425) ilvC 1143417..1144409 (-) 993 WP_245067494.1 ketol-acid reductoisomerase -
  MPG41_RS05435 (MPG41_05435) - 1144658..1145440 (+) 783 WP_245067495.1 NAD+ synthase -
  MPG41_RS05440 (MPG41_05440) - 1145437..1146375 (+) 939 WP_245067496.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15245.70 Da        Isoelectric Point: 7.7011

>NTDB_id=666963 MPG41_RS05405 WP_245067491.1 1141143..1141547(-) (dprB) [Helicobacter pylori strain Hpfe072]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNACIEHFIKLLDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666963 MPG41_RS05405 WP_245067491.1 1141143..1141547(-) (dprB) [Helicobacter pylori strain Hpfe072]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGTGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGACAATTTGGAGCATTTGGGTAGGAAAAATAAGCGGCT
TGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.233

99.254

0.925