Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG17_RS07020 Genome accession   NZ_CP094107
Coordinates   1475155..1476468 (-) Length   437 a.a.
NCBI ID   WP_245017801.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470155..1481468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS06990 (MPG17_06990) nadC 1470618..1471439 (-) 822 WP_245017798.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG17_RS06995 (MPG17_06995) nadA 1471439..1472449 (-) 1011 WP_245017799.1 quinolinate synthase NadA -
  MPG17_RS07000 (MPG17_07000) - 1472436..1473242 (-) 807 WP_245017800.1 phosphatidylserine decarboxylase -
  MPG17_RS07005 (MPG17_07005) - 1473239..1473742 (-) 504 WP_154497065.1 helix-turn-helix domain-containing protein -
  MPG17_RS07010 (MPG17_07010) - 1473755..1474249 (-) 495 WP_180591492.1 hypothetical protein -
  MPG17_RS07015 (MPG17_07015) mqnP 1474242..1475126 (-) 885 WP_060871245.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG17_RS07020 (MPG17_07020) comEC/comE3 1475155..1476468 (-) 1314 WP_245017801.1 ComEC/Rec2 family competence protein Machinery gene
  MPG17_RS07025 (MPG17_07025) - 1476465..1477931 (-) 1467 WP_245017802.1 replicative DNA helicase -
  MPG17_RS07030 (MPG17_07030) - 1477942..1479336 (-) 1395 WP_245017803.1 NAD(P)H-hydrate dehydratase -
  MPG17_RS07035 (MPG17_07035) crdS 1479339..1480541 (-) 1203 WP_245018308.1 copper-sensing histidine kinase CrdS -
  MPG17_RS07040 (MPG17_07040) crdR 1480507..1481148 (-) 642 WP_245017804.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50106.02 Da        Isoelectric Point: 9.8513

>NTDB_id=666946 MPG17_RS07020 WP_245017801.1 1475155..1476468(-) (comEC/comE3) [Helicobacter pylori strain Hpfe074]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLDMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666946 MPG17_RS07020 WP_245017801.1 1475155..1476468(-) (comEC/comE3) [Helicobacter pylori strain Hpfe074]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACTACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGGACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954