Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG17_RS05545 Genome accession   NZ_CP094107
Coordinates   1171350..1171754 (-) Length   134 a.a.
NCBI ID   WP_245017645.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1166350..1176754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS05500 (MPG17_05500) - 1166522..1167607 (-) 1086 WP_245017640.1 hypothetical protein -
  MPG17_RS05505 (MPG17_05505) - 1167597..1168382 (-) 786 WP_245017641.1 hypothetical protein -
  MPG17_RS05510 (MPG17_05510) - 1168382..1168768 (-) 387 WP_245017642.1 DUF1294 domain-containing protein -
  MPG17_RS05515 (MPG17_05515) - 1169090..1169251 (-) 162 WP_014536434.1 lysozyme -
  MPG17_RS05520 (MPG17_05520) - 1169271..1169771 (-) 501 WP_245017643.1 glycoside hydrolase family protein -
  MPG17_RS05525 (MPG17_05525) - 1169782..1170342 (-) 561 WP_154408480.1 hypothetical protein -
  MPG17_RS05530 (MPG17_05530) - 1170326..1170664 (-) 339 WP_000699916.1 hypothetical protein -
  MPG17_RS05535 (MPG17_05535) - 1170853..1170948 (-) 96 WP_229763748.1 hypothetical protein -
  MPG17_RS05540 (MPG17_05540) - 1171016..1171216 (-) 201 WP_245017644.1 tetratricopeptide repeat protein -
  MPG17_RS05545 (MPG17_05545) dprB 1171350..1171754 (-) 405 WP_245017645.1 Holliday junction resolvase RuvX Machinery gene
  MPG17_RS05550 (MPG17_05550) dprA 1171751..1172551 (-) 801 WP_245017646.1 DNA-processing protein DprA Machinery gene
  MPG17_RS05555 (MPG17_05555) minE 1172563..1172796 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG17_RS05560 (MPG17_05560) minD 1172793..1173599 (-) 807 WP_075668161.1 septum site-determining protein MinD -
  MPG17_RS05565 (MPG17_05565) ilvC 1173624..1174616 (-) 993 WP_245017647.1 ketol-acid reductoisomerase -
  MPG17_RS05575 (MPG17_05575) - 1174864..1175646 (+) 783 WP_245017648.1 NAD+ synthase -
  MPG17_RS05580 (MPG17_05580) - 1175643..1176581 (+) 939 WP_245017649.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15263.79 Da        Isoelectric Point: 9.1735

>NTDB_id=666942 MPG17_RS05545 WP_245017645.1 1171350..1171754(-) (dprB) [Helicobacter pylori strain Hpfe074]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQHVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666942 MPG17_RS05545 WP_245017645.1 1171350..1171754(-) (dprB) [Helicobacter pylori strain Hpfe074]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCATGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948