Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF92_RS07225 Genome accession   NZ_CP094106
Coordinates   1521134..1522447 (-) Length   437 a.a.
NCBI ID   WP_245023796.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516134..1527447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS07195 (MPF92_07195) nadC 1516597..1517418 (-) 822 WP_245023792.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF92_RS07200 (MPF92_07200) nadA 1517418..1518428 (-) 1011 WP_245023793.1 quinolinate synthase NadA -
  MPF92_RS07205 (MPF92_07205) - 1518418..1519221 (-) 804 WP_245023794.1 phosphatidylserine decarboxylase -
  MPF92_RS07210 (MPF92_07210) - 1519218..1519721 (-) 504 WP_000953083.1 hypothetical protein -
  MPF92_RS07215 (MPF92_07215) - 1519734..1520228 (-) 495 WP_245023795.1 hypothetical protein -
  MPF92_RS07220 (MPF92_07220) mqnP 1520221..1521105 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF92_RS07225 (MPF92_07225) comEC/comE3 1521134..1522447 (-) 1314 WP_245023796.1 ComEC/Rec2 family competence protein Machinery gene
  MPF92_RS07230 (MPF92_07230) - 1522444..1523910 (-) 1467 WP_245023797.1 replicative DNA helicase -
  MPF92_RS07235 (MPF92_07235) - 1523922..1525316 (-) 1395 WP_245023798.1 NAD(P)H-hydrate dehydratase -
  MPF92_RS07240 (MPF92_07240) crdS 1525319..1526521 (-) 1203 WP_245024490.1 copper-sensing histidine kinase CrdS -
  MPF92_RS07245 (MPF92_07245) crdR 1526487..1527128 (-) 642 WP_245023799.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50110.05 Da        Isoelectric Point: 9.8515

>NTDB_id=666926 MPF92_RS07225 WP_245023796.1 1521134..1522447(-) (comEC/comE3) [Helicobacter pylori strain Hpfe075]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSFNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDLKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666926 MPF92_RS07225 WP_245023796.1 1521134..1522447(-) (comEC/comE3) [Helicobacter pylori strain Hpfe075]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGTTTTAACG
CTCAAATCTTGTTGCAATACCCTAAAACCAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATCTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952