Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG782_RS30930 Genome accession   NZ_CP108800
Coordinates   7064480..7065112 (-) Length   210 a.a.
NCBI ID   WP_406456590.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00876     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7059480..7070112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG782_RS30905 (OG782_30915) - 7059711..7060358 (-) 648 WP_406456582.1 hypothetical protein -
  OG782_RS30910 (OG782_30920) - 7060639..7061367 (+) 729 WP_406456584.1 DUF4232 domain-containing protein -
  OG782_RS30915 (OG782_30925) aceB 7061461..7063080 (-) 1620 WP_406456586.1 malate synthase A -
  OG782_RS30920 (OG782_30930) - 7063314..7063934 (-) 621 WP_406456588.1 NTP transferase domain-containing protein -
  OG782_RS30925 (OG782_30935) - 7064153..7064455 (+) 303 WP_406459360.1 DUF5955 family protein -
  OG782_RS30930 (OG782_30940) vraR 7064480..7065112 (-) 633 WP_406456590.1 response regulator Regulator
  OG782_RS30935 (OG782_30945) - 7065109..7066314 (-) 1206 WP_406456592.1 sensor histidine kinase -
  OG782_RS30940 (OG782_30950) - 7066425..7067519 (+) 1095 WP_406456594.1 ABC transporter permease -
  OG782_RS30945 (OG782_30955) - 7067516..7068196 (+) 681 WP_406456596.1 ABC transporter ATP-binding protein -
  OG782_RS30950 (OG782_30960) - 7068270..7069070 (-) 801 WP_406456597.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22051.39 Da        Isoelectric Point: 6.3422

>NTDB_id=666926 OG782_RS30930 WP_406456590.1 7064480..7065112(-) (vraR) [Streptomyces sp. NBC_00876]
MTTPIRLLLADDHPVVRAGLRAVLDTEPDFRVAAEAATAEQAVALAATGEFDVVLMDLQFGAGMHGSEATAAITAAPDAP
RVLILTTYDSDADILAAVEAGAAGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAEALTKRELEVLQLVG
EGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTAAVAAATARRLIRR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=666926 OG782_RS30930 WP_406456590.1 7064480..7065112(-) (vraR) [Streptomyces sp. NBC_00876]
ATGACCACCCCGATCAGACTGCTGCTCGCCGACGACCACCCGGTGGTCCGGGCGGGACTGCGGGCCGTTCTCGACACCGA
ACCGGACTTCCGGGTCGCCGCCGAGGCCGCCACCGCCGAACAGGCCGTCGCGCTGGCCGCGACCGGCGAGTTCGACGTCG
TCCTGATGGACCTGCAGTTCGGTGCGGGTATGCACGGCTCGGAGGCCACCGCCGCGATCACAGCGGCGCCGGACGCGCCC
CGGGTCCTGATCCTCACGACGTACGACAGCGACGCCGACATCCTGGCGGCGGTGGAGGCGGGCGCCGCCGGCTATCTGCT
CAAGGACGCCCCGCCGGAGGAGCTCGCCGCAGCGGTCCGTACCGCGGCGGCCGGCCGCTCCGCTCTCGCGCCGGCTGTCG
CGCACCGGCTGATGGACCGCATGCGGACGCCGGCCGAAGCACTCACCAAGCGCGAGCTGGAGGTGCTGCAACTGGTCGGC
GAGGGCCTGTCGAACCTGCAGATCAGCAAGCGGCTCTTCCTCAGCCAGGCGACGGTCAAGTCCCATCTGGTGCACATCTA
CGCCAAGCTGGGCGTGGACTCGCGCACCGCGGCGGTCGCGGCGGCGACGGCCCGCAGGCTCATCCGCCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-201)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.019

99.048

0.367
  degU Bacillus subtilis subsp. subtilis str. 168

34.545

100

0.362