Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF92_RS05485 Genome accession   NZ_CP094106
Coordinates   1164425..1164829 (-) Length   134 a.a.
NCBI ID   WP_245023613.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159425..1169829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS05440 (MPF92_05440) - 1159607..1160707 (-) 1101 WP_245023607.1 hypothetical protein -
  MPF92_RS05445 (MPF92_05445) - 1160697..1161482 (-) 786 WP_245023608.1 hypothetical protein -
  MPF92_RS05450 (MPF92_05450) - 1161482..1161868 (-) 387 WP_245023609.1 DUF1294 domain-containing protein -
  MPF92_RS05455 (MPF92_05455) - 1162196..1162357 (-) 162 WP_245023610.1 lysozyme -
  MPF92_RS05460 (MPF92_05460) - 1162377..1162622 (-) 246 WP_245012415.1 lysozyme -
  MPF92_RS05465 (MPF92_05465) - 1162672..1162854 (-) 183 WP_245023611.1 lysozyme -
  MPF92_RS05470 (MPF92_05470) - 1162865..1163425 (-) 561 WP_154568960.1 hypothetical protein -
  MPF92_RS05475 (MPF92_05475) - 1163409..1163747 (-) 339 WP_180671408.1 hypothetical protein -
  MPF92_RS05480 (MPF92_05480) - 1163970..1164299 (-) 330 WP_245023612.1 tetratricopeptide repeat protein -
  MPF92_RS05485 (MPF92_05485) dprB 1164425..1164829 (-) 405 WP_245023613.1 Holliday junction resolvase RuvX Machinery gene
  MPF92_RS05490 (MPF92_05490) dprA 1164826..1165626 (-) 801 WP_245023614.1 DNA-processing protein DprA Machinery gene
  MPF92_RS05495 (MPF92_05495) minE 1165638..1165871 (-) 234 WP_000051411.1 cell division topological specificity factor MinE -
  MPF92_RS05500 (MPF92_05500) minD 1165868..1166674 (-) 807 WP_001019068.1 septum site-determining protein MinD -
  MPF92_RS05505 (MPF92_05505) ilvC 1166693..1167685 (-) 993 WP_245023615.1 ketol-acid reductoisomerase -
  MPF92_RS05515 (MPF92_05515) - 1167934..1168716 (+) 783 WP_212864735.1 NAD+ synthase -
  MPF92_RS05520 (MPF92_05520) - 1168713..1169651 (+) 939 WP_120930378.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15253.80 Da        Isoelectric Point: 9.5675

>NTDB_id=666920 MPF92_RS05485 WP_245023613.1 1164425..1164829(-) (dprB) [Helicobacter pylori strain Hpfe075]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666920 MPF92_RS05485 WP_245023613.1 1164425..1164829(-) (dprB) [Helicobacter pylori strain Hpfe075]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGTTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955