Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF92_RS00010 Genome accession   NZ_CP094106
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_245023861.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS00005 (MPF92_00005) dnaA 1..1368 (+) 1368 WP_245023860.1 chromosomal replication initiator protein DnaA -
  MPF92_RS00010 (MPF92_00010) comH 1588..3021 (+) 1434 WP_245023861.1 competence protein Machinery gene
  MPF92_RS00020 (MPF92_00020) - 3199..3951 (+) 753 WP_075653384.1 exodeoxyribonuclease III -
  MPF92_RS00025 (MPF92_00025) - 3948..4583 (-) 636 WP_245023862.1 outer membrane protein -
  MPF92_RS00030 (MPF92_00030) - 4587..4940 (-) 354 WP_000837005.1 hypothetical protein -
  MPF92_RS00035 (MPF92_00035) recG 5022..6887 (+) 1866 WP_245023863.1 ATP-dependent DNA helicase RecG -
  MPF92_RS00040 (MPF92_00040) - 6929..7786 (+) 858 Protein_6 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54590.50 Da        Isoelectric Point: 7.2362

>NTDB_id=666909 MPF92_RS00010 WP_245023861.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe075]
MKKTLCLSFFLTFSNPLQALVIELLEEIKASPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPMQKPQNKPTSSQQSSQNFSYPEPKLGSKNSKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADTNEHHESNENRDNGEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESQYQITSQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666909 MPF92_RS00010 WP_245023861.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe075]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAGCTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTTCTCAAAACTTCTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTTTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTAATGAAC
ACCATGAAAGCAATGAAAATAGGGATAATGGGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAGAGGGCTAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAAAGTCAGTATCAAATCACCTCTCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAGATAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.925