Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG65_RS06870 Genome accession   NZ_CP094105
Coordinates   1445313..1446626 (-) Length   437 a.a.
NCBI ID   WP_245072015.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe076     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440313..1451626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS06840 (MPG65_06840) nadC 1440776..1441597 (-) 822 WP_245072010.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG65_RS06845 (MPG65_06845) nadA 1441597..1442607 (-) 1011 WP_245072011.1 quinolinate synthase NadA -
  MPG65_RS06850 (MPG65_06850) - 1442597..1443400 (-) 804 WP_245072013.1 phosphatidylserine decarboxylase -
  MPG65_RS06855 (MPG65_06855) - 1443397..1443900 (-) 504 WP_000953083.1 hypothetical protein -
  MPG65_RS06860 (MPG65_06860) - 1443913..1444407 (-) 495 WP_014537179.1 hypothetical protein -
  MPG65_RS06865 (MPG65_06865) mqnP 1444400..1445284 (-) 885 WP_000913962.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG65_RS06870 (MPG65_06870) comEC/comE3 1445313..1446626 (-) 1314 WP_245072015.1 ComEC/Rec2 family competence protein Machinery gene
  MPG65_RS06875 (MPG65_06875) - 1446623..1448089 (-) 1467 WP_245072017.1 replicative DNA helicase -
  MPG65_RS06880 (MPG65_06880) - 1448100..1449494 (-) 1395 WP_245072019.1 NAD(P)H-hydrate dehydratase -
  MPG65_RS06885 (MPG65_06885) crdS 1449497..1450699 (-) 1203 WP_245072830.1 copper-sensing histidine kinase CrdS -
  MPG65_RS06890 (MPG65_06890) crdR 1450665..1451306 (-) 642 WP_245072021.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49964.89 Da        Isoelectric Point: 9.8315

>NTDB_id=666904 MPG65_RS06870 WP_245072015.1 1445313..1446626(-) (comEC/comE3) [Helicobacter pylori strain Hpfe076]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILGASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666904 MPG65_RS06870 WP_245072015.1 1445313..1446626(-) (comEC/comE3) [Helicobacter pylori strain Hpfe076]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTCTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGTGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GGGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95