Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG65_RS00010 Genome accession   NZ_CP094105
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245072123.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe076     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS00005 (MPG65_00005) dnaA 1..1368 (+) 1368 WP_245072121.1 chromosomal replication initiator protein DnaA -
  MPG65_RS00010 (MPG65_00010) comH 1589..3028 (+) 1440 WP_245072123.1 competence protein Machinery gene
  MPG65_RS00020 (MPG65_00020) - 3206..3958 (+) 753 WP_245072125.1 exodeoxyribonuclease III -
  MPG65_RS00025 (MPG65_00025) - 3955..4590 (-) 636 WP_000668030.1 outer membrane protein -
  MPG65_RS00030 (MPG65_00030) - 4594..4947 (-) 354 WP_024116130.1 hypothetical protein -
  MPG65_RS00035 (MPG65_00035) recG 5029..6894 (+) 1866 WP_245072127.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54953.82 Da        Isoelectric Point: 7.4339

>NTDB_id=666888 MPG65_RS00010 WP_245072123.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe076]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHSHQMPSLNAPIQKPQNKPTSSQQSPQNFSYTESKLGSKNPRNSLLQPL
ATPSKISSANEVKTPTNDTKPPLRHSSEDQENNLFVTPPIEKTLPNNTPNANINEHNESNENRDNVEKQTIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNEL
NLNDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666888 MPG65_RS00010 WP_245072123.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe076]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACTCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCCTCAAAACTTCTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAGAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAGGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCATTGAAAAAACACTCCCTAACAACACTCCTAACGCTAATATTA
ATGAACACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAACGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCACAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCCTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.232

100

0.912