Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG14_RS07095 Genome accession   NZ_CP094102
Coordinates   1479525..1480838 (-) Length   437 a.a.
NCBI ID   WP_245053887.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe078     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1474525..1485838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG14_RS07065 (MPG14_07065) nadC 1474988..1475809 (-) 822 WP_245053879.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG14_RS07070 (MPG14_07070) nadA 1475809..1476819 (-) 1011 WP_245053881.1 quinolinate synthase NadA -
  MPG14_RS07075 (MPG14_07075) - 1476809..1477612 (-) 804 WP_245053883.1 phosphatidylserine decarboxylase -
  MPG14_RS07080 (MPG14_07080) - 1477609..1478112 (-) 504 WP_000953085.1 hypothetical protein -
  MPG14_RS07085 (MPG14_07085) - 1478125..1478619 (-) 495 WP_180602032.1 hypothetical protein -
  MPG14_RS07090 (MPG14_07090) mqnP 1478612..1479454 (-) 843 WP_245053885.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG14_RS07095 (MPG14_07095) comEC/comE3 1479525..1480838 (-) 1314 WP_245053887.1 ComEC/Rec2 family competence protein Machinery gene
  MPG14_RS07100 (MPG14_07100) - 1480835..1482301 (-) 1467 WP_245053889.1 replicative DNA helicase -
  MPG14_RS07105 (MPG14_07105) - 1482312..1483706 (-) 1395 WP_245053891.1 NAD(P)H-hydrate dehydratase -
  MPG14_RS07110 (MPG14_07110) crdS 1483709..1484911 (-) 1203 WP_245054841.1 copper-sensing histidine kinase CrdS -
  MPG14_RS07115 (MPG14_07115) crdR 1484877..1485518 (-) 642 WP_245053893.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50216.19 Da        Isoelectric Point: 9.7841

>NTDB_id=666883 MPG14_RS07095 WP_245053887.1 1479525..1480838(-) (comEC/comE3) [Helicobacter pylori strain Hpfe078]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLVREQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666883 MPG14_RS07095 WP_245053887.1 1479525..1480838(-) (comEC/comE3) [Helicobacter pylori strain Hpfe078]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAGTGCGAGAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGT
GCGCTGGTGTTTTTGAACATGCTCATCATTGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTGAGCACGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945