Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF96_RS05405 Genome accession   NZ_CP094101
Coordinates   1128770..1129174 (-) Length   134 a.a.
NCBI ID   WP_060758111.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1123770..1134174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS05365 (MPF96_05365) - 1124027..1125118 (-) 1092 WP_245048513.1 hypothetical protein -
  MPF96_RS05370 (MPF96_05370) - 1125108..1125893 (-) 786 WP_245048514.1 hypothetical protein -
  MPF96_RS05375 (MPF96_05375) - 1125893..1126279 (-) 387 WP_245048515.1 DUF1294 domain-containing protein -
  MPF96_RS05380 (MPF96_05380) - 1126622..1126783 (-) 162 WP_001871784.1 hypothetical protein -
  MPF96_RS05385 (MPF96_05385) - 1126803..1127297 (-) 495 WP_245048516.1 lysozyme -
  MPF96_RS05390 (MPF96_05390) - 1127308..1127874 (-) 567 WP_245048517.1 hypothetical protein -
  MPF96_RS05395 (MPF96_05395) - 1127858..1128196 (-) 339 WP_245048518.1 hypothetical protein -
  MPF96_RS05400 (MPF96_05400) - 1128385..1128639 (-) 255 WP_245063033.1 tetratricopeptide repeat protein -
  MPF96_RS05405 (MPF96_05405) dprB 1128770..1129174 (-) 405 WP_060758111.1 Holliday junction resolvase RuvX Machinery gene
  MPF96_RS05410 (MPF96_05410) dprA 1129171..1129971 (-) 801 WP_245048519.1 DNA-processing protein DprA Machinery gene
  MPF96_RS05415 (MPF96_05415) minE 1129983..1130216 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF96_RS05420 (MPF96_05420) minD 1130213..1131019 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPF96_RS05425 (MPF96_05425) ilvC 1131044..1132036 (-) 993 WP_245048520.1 ketol-acid reductoisomerase -
  MPF96_RS05435 (MPF96_05435) - 1132285..1133067 (+) 783 WP_245048521.1 NAD+ synthase -
  MPF96_RS05440 (MPF96_05440) - 1133064..1134002 (+) 939 WP_245048522.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15224.69 Da        Isoelectric Point: 9.1725

>NTDB_id=666860 MPF96_RS05405 WP_060758111.1 1128770..1129174(-) (dprB) [Helicobacter pylori strain Hpfe079]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666860 MPF96_RS05405 WP_060758111.1 1128770..1129174(-) (dprB) [Helicobacter pylori strain Hpfe079]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948