Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF96_RS00010 Genome accession   NZ_CP094101
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245049050.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS00005 (MPF96_00005) dnaA 1..1368 (+) 1368 WP_024774105.1 chromosomal replication initiator protein DnaA -
  MPF96_RS00010 (MPF96_00010) comH 1589..3028 (+) 1440 WP_245049050.1 competence protein Machinery gene
  MPF96_RS00020 (MPF96_00020) - 3206..3958 (+) 753 WP_245049052.1 exodeoxyribonuclease III -
  MPF96_RS00025 (MPF96_00025) - 3955..4590 (-) 636 WP_000668030.1 outer membrane protein -
  MPF96_RS00030 (MPF96_00030) - 4594..4947 (-) 354 WP_220829891.1 hypothetical protein -
  MPF96_RS00035 (MPF96_00035) recG 5029..6894 (+) 1866 WP_245049054.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54893.68 Da        Isoelectric Point: 7.0431

>NTDB_id=666849 MPF96_RS00010 WP_245049050.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe079]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLNE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHSHQMPSLNAPMQKPQNKPTSSQQSLQNFSYSESKLGSKNPKNSLLQPL
ATPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADTNEHNESNENRDNVEKQTIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666849 MPF96_RS00010 WP_245049050.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe079]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGGCAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTAATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACTCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTA
ATGAACACAATGAAAGCAATGAGAATAGAGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.902

100

0.929