Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OH805_RS31155 Genome accession   NZ_CP108799
Coordinates   6889116..6890195 (+) Length   359 a.a.
NCBI ID   WP_406306066.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00879     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6884116..6895195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH805_RS31125 (OH805_31090) - 6884753..6885298 (+) 546 WP_324978451.1 hypothetical protein -
  OH805_RS31130 (OH805_31095) pdxS 6885431..6886345 (+) 915 WP_406306063.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OH805_RS31135 (OH805_31100) pdxT 6886345..6886944 (+) 600 WP_324978448.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OH805_RS31140 (OH805_31105) - 6887008..6887760 (+) 753 WP_406403838.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OH805_RS31145 (OH805_31110) ruvC 6887925..6888467 (+) 543 WP_406403840.1 crossover junction endodeoxyribonuclease RuvC -
  OH805_RS31150 (OH805_31115) ruvA 6888464..6889084 (+) 621 WP_406403842.1 Holliday junction branch migration protein RuvA -
  OH805_RS31155 (OH805_31120) ruvB 6889116..6890195 (+) 1080 WP_406306066.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OH805_RS31160 (OH805_31125) yajC 6890360..6890857 (+) 498 WP_406403844.1 preprotein translocase subunit YajC -
  OH805_RS31165 (OH805_31130) secD 6891004..6892761 (+) 1758 WP_406403846.1 protein translocase subunit SecD -
  OH805_RS31170 (OH805_31135) secF 6892763..6893863 (+) 1101 WP_406306069.1 protein translocase subunit SecF -
  OH805_RS31175 (OH805_31140) - 6893860..6894402 (+) 543 WP_406306071.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38317.83 Da        Isoelectric Point: 4.7492

>NTDB_id=666848 OH805_RS31155 WP_406306066.1 6889116..6890195(+) (ruvB) [Streptomyces sp. NBC_00879]
MNWDDTAPTTDDIAAERLVGASADGEDQAVEAALRPKSLDEFVGQERVREQLDLVLKAALARGATADHVLLSGAPGLGKT
TLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSAQLLDLDIEADGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKVDGLITREVAAAALKVYEVDARGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWAHLGLVPPQQAPGTGGQQGLFGT

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=666848 OH805_RS31155 WP_406306066.1 6889116..6890195(+) (ruvB) [Streptomyces sp. NBC_00879]
GTGAACTGGGACGACACCGCACCGACGACCGACGACATCGCCGCTGAGCGGCTCGTCGGCGCGTCCGCCGACGGCGAGGA
CCAGGCTGTCGAGGCGGCACTGCGGCCGAAGTCGCTGGACGAGTTCGTCGGCCAGGAACGGGTCCGGGAGCAGTTGGACC
TCGTCCTGAAGGCGGCTCTCGCCCGGGGCGCCACCGCCGACCATGTCCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACC
ACCCTGTCCATGATCATCGCGGCGGAGATGAACGCCCCGATCCGGATCACCTCGGGCCCGGCCATCCAGCACGCCGGTGA
TCTGGCCGCGATCCTGTCCTCGCTCCAGGAGGGTGAGGTTCTCTTCCTCGACGAGATCCACCGGATGTCGCGGCCCGCCG
AGGAGATGCTCTACATGGCCATGGAGGACTTCCGGGTCGACGTGATCGTCGGCAAGGGCCCGGGAGCCACCGCCATTCCG
CTGGAGCTGCCTCCGTTCACGCTGGTAGGGGCCACCACCCGGGCAGGGCTGCTGCCGCCCCCACTGCGCGACCGCTTCGG
CTTCACCGCGCACATGGAGTTCTACGAGCCCGCGGAGCTGGAGCGCGTGATCCACCGCTCCGCACAGCTTCTCGACCTCG
ACATAGAGGCCGACGGCGCCGCAGAGATCGCCGGACGCTCCCGCGGCACGCCCCGCATCGCCAACCGGCTGCTGCGCCGC
GTCCGGGACTATGCCCAGGTCAAGGTGGACGGCCTGATCACCCGCGAGGTGGCAGCCGCAGCCCTGAAGGTGTACGAGGT
CGACGCCCGCGGACTCGACCGCCTCGACCGTGCCGTCCTTACGGCGCTGCTGAAGCTCTTCGGCGGGGGCCCGGTGGGGC
TGTCGACGCTCGCGGTGGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTGGCCGAGCCCTTCCTGGTACGGGAGGGA
CTGCTGGCCCGCACGCCGCGCGGCCGGGTCGCCACCCCTGCCGCATGGGCCCACCTGGGCCTCGTACCGCCTCAGCAGGC
CCCCGGCACAGGCGGACAACAGGGTCTGTTCGGGACGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.424

91.922

0.482
  ruvB Synechocystis sp. PCC 6803

52.322

89.972

0.471
  ruvB Helicobacter pylori 26695

49.254

93.315

0.46
  ruvB Streptococcus pneumoniae TIGR4

50.617

90.251

0.457
  ruvB Streptococcus pneumoniae R6

50.617

90.251

0.457
  ruvB Streptococcus pneumoniae D39

50.617

90.251

0.457