Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG36_RS07005 Genome accession   NZ_CP094099
Coordinates   1467799..1468080 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe080     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462799..1473080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS06985 (MPG36_06985) - 1463472..1464902 (-) 1431 WP_174245774.1 COG3014 family protein -
  MPG36_RS06995 (MPG36_06995) comB4 1465171..1467534 (-) 2364 WP_245016978.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG36_RS07000 (MPG36_07000) comB3 1467536..1467799 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG36_RS07005 (MPG36_07005) comB2 1467799..1468080 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG36_RS07010 (MPG36_07010) - 1468225..1469052 (-) 828 WP_048944995.1 DUF5718 family protein -
  MPG36_RS07015 (MPG36_07015) - 1469141..1470193 (-) 1053 WP_245016979.1 MnmA/TRMU family protein -
  MPG36_RS07020 (MPG36_07020) dnaG 1470190..1471869 (-) 1680 WP_245016980.1 DNA primase -
  MPG36_RS07025 (MPG36_07025) groES 1472157..1472513 (+) 357 WP_000671955.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666848 MPG36_RS07005 WP_001272686.1 1467799..1468080(-) (comB2) [Helicobacter pylori strain Hpfe080]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666848 MPG36_RS07005 WP_001272686.1 1467799..1468080(-) (comB2) [Helicobacter pylori strain Hpfe080]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989