Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG36_RS07000 Genome accession   NZ_CP094099
Coordinates   1467536..1467799 (-) Length   87 a.a.
NCBI ID   WP_000584970.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462536..1472799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS06985 (MPG36_06985) - 1463472..1464902 (-) 1431 WP_174245774.1 COG3014 family protein -
  MPG36_RS06995 (MPG36_06995) comB4 1465171..1467534 (-) 2364 WP_245016978.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG36_RS07000 (MPG36_07000) comB3 1467536..1467799 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG36_RS07005 (MPG36_07005) comB2 1467799..1468080 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG36_RS07010 (MPG36_07010) - 1468225..1469052 (-) 828 WP_048944995.1 DUF5718 family protein -
  MPG36_RS07015 (MPG36_07015) - 1469141..1470193 (-) 1053 WP_245016979.1 MnmA/TRMU family protein -
  MPG36_RS07020 (MPG36_07020) dnaG 1470190..1471869 (-) 1680 WP_245016980.1 DNA primase -
  MPG36_RS07025 (MPG36_07025) groES 1472157..1472513 (+) 357 WP_000671955.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.16 Da        Isoelectric Point: 9.5290

>NTDB_id=666847 MPG36_RS07000 WP_000584970.1 1467536..1467799(-) (comB3) [Helicobacter pylori strain Hpfe080]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666847 MPG36_RS07000 WP_000584970.1 1467536..1467799(-) (comB3) [Helicobacter pylori strain Hpfe080]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977