Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG36_RS06855 Genome accession   NZ_CP094099
Coordinates   1431561..1432874 (-) Length   437 a.a.
NCBI ID   WP_245016966.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426561..1437874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS06825 (MPG36_06825) nadC 1427024..1427845 (-) 822 WP_245016962.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG36_RS06830 (MPG36_06830) nadA 1427845..1428855 (-) 1011 WP_245016963.1 quinolinate synthase NadA -
  MPG36_RS06835 (MPG36_06835) - 1428842..1429648 (-) 807 WP_245016964.1 phosphatidylserine decarboxylase -
  MPG36_RS06840 (MPG36_06840) - 1429645..1430148 (-) 504 WP_000953102.1 hypothetical protein -
  MPG36_RS06845 (MPG36_06845) - 1430161..1430655 (-) 495 WP_245016965.1 hypothetical protein -
  MPG36_RS06850 (MPG36_06850) mqnP 1430648..1431532 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG36_RS06855 (MPG36_06855) comEC/comE3 1431561..1432874 (-) 1314 WP_245016966.1 ComEC/Rec2 family competence protein Machinery gene
  MPG36_RS06860 (MPG36_06860) - 1432871..1434331 (-) 1461 WP_245016967.1 replicative DNA helicase -
  MPG36_RS06865 (MPG36_06865) - 1434342..1435736 (-) 1395 WP_245016968.1 NAD(P)H-hydrate dehydratase -
  MPG36_RS06870 (MPG36_06870) crdS 1435739..1436941 (-) 1203 WP_245017448.1 copper-sensing histidine kinase CrdS -
  MPG36_RS06875 (MPG36_06875) crdR 1436907..1437548 (-) 642 WP_001169798.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50100.06 Da        Isoelectric Point: 9.8368

>NTDB_id=666844 MPG36_RS06855 WP_245016966.1 1431561..1432874(-) (comEC/comE3) [Helicobacter pylori strain Hpfe080]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRYFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
TLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLVVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666844 MPG36_RS06855 WP_245016966.1 1431561..1432874(-) (comEC/comE3) [Helicobacter pylori strain Hpfe080]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCTATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAATGCGTTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
ACGCTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTAGATAGCA
TTTTAAACATGCCTTTAACAATCCCCACAATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAGTTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947