Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG36_RS05395 Genome accession   NZ_CP094099
Coordinates   1130546..1130950 (-) Length   134 a.a.
NCBI ID   WP_245016801.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125546..1135950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS05355 (MPG36_05355) - 1125665..1126806 (-) 1142 Protein_1037 hypothetical protein -
  MPG36_RS05360 (MPG36_05360) - 1126796..1127581 (-) 786 WP_245016797.1 hypothetical protein -
  MPG36_RS05365 (MPG36_05365) - 1127581..1127962 (-) 382 Protein_1039 DUF1294 domain-containing protein -
  MPG36_RS05370 (MPG36_05370) - 1128287..1128448 (-) 162 WP_014536434.1 lysozyme -
  MPG36_RS05375 (MPG36_05375) - 1128468..1128674 (-) 207 WP_245016798.1 lysozyme -
  MPG36_RS05380 (MPG36_05380) - 1128985..1129545 (-) 561 WP_245016799.1 hypothetical protein -
  MPG36_RS05385 (MPG36_05385) - 1129529..1129867 (-) 339 WP_000699916.1 hypothetical protein -
  MPG36_RS05390 (MPG36_05390) - 1130056..1130418 (-) 363 WP_245016800.1 tetratricopeptide repeat protein -
  MPG36_RS05395 (MPG36_05395) dprB 1130546..1130950 (-) 405 WP_245016801.1 Holliday junction resolvase RuvX Machinery gene
  MPG36_RS05400 (MPG36_05400) dprA 1130947..1131747 (-) 801 WP_001919404.1 DNA-processing protein DprA Machinery gene
  MPG36_RS05405 (MPG36_05405) minE 1131759..1131992 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG36_RS05410 (MPG36_05410) minD 1131989..1132795 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG36_RS05415 (MPG36_05415) ilvC 1132814..1133806 (-) 993 WP_245016802.1 ketol-acid reductoisomerase -
  MPG36_RS05425 (MPG36_05425) - 1134057..1134839 (+) 783 WP_245016803.1 NAD+ synthase -
  MPG36_RS05430 (MPG36_05430) - 1134836..1135774 (+) 939 WP_245016804.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15260.77 Da        Isoelectric Point: 9.1637

>NTDB_id=666840 MPG36_RS05395 WP_245016801.1 1130546..1130950(-) (dprB) [Helicobacter pylori strain Hpfe080]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILEHYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666840 MPG36_RS05395 WP_245016801.1 1130546..1130950(-) (dprB) [Helicobacter pylori strain Hpfe080]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCCGCGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCACTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955