Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OH805_RS25525 Genome accession   NZ_CP108799
Coordinates   5668620..5670353 (-) Length   577 a.a.
NCBI ID   WP_406402579.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00879     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5663620..5675353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH805_RS25515 (OH805_25490) - 5665264..5666445 (+) 1182 Protein_5031 RNA polymerase sigma factor -
  OH805_RS25520 (OH805_25495) rcrQ 5666701..5668623 (-) 1923 WP_406402577.1 ABC transporter ATP-binding protein Regulator
  OH805_RS25525 (OH805_25500) rcrP 5668620..5670353 (-) 1734 WP_406402579.1 ABC transporter ATP-binding protein Regulator
  OH805_RS25530 (OH805_25505) - 5670446..5671891 (-) 1446 WP_406305162.1 FGGY family carbohydrate kinase -
  OH805_RS25535 (OH805_25510) - 5671928..5672227 (-) 300 WP_324989785.1 YtxH domain-containing protein -
  OH805_RS25555 (OH805_25530) - 5673499..5674014 (-) 516 WP_406402581.1 PepSY domain-containing protein -
  OH805_RS25560 (OH805_25535) - 5674193..5675215 (-) 1023 WP_406402583.1 pyridoxal-phosphate dependent enzyme -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62566.62 Da        Isoelectric Point: 5.5341

>NTDB_id=666836 OH805_RS25525 WP_406402579.1 5668620..5670353(-) (rcrP) [Streptomyces sp. NBC_00879]
MLIRLLRTHLGPYRQPITLLVVLQLLQTSATLYLPTLNADIIDNGVVRGNTGYILRLGALMIAVSIVQVLCNIGAVYIGA
QTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEAGRFRGANNELTDVSLSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTHSSVIP
PIKAVRELRSHGHLEVRAVEFRYPGAEESVLRDVTLLARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
DLDPGLMAKTVGLVPQRPYLFSGTVATNLRYGKPDASDEELWQALEVAQAADFVRELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALARETSEATVVIVAQRVSTIREADRIVVLDEGQVVGTGSHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=666836 OH805_RS25525 WP_406402579.1 5668620..5670353(-) (rcrP) [Streptomyces sp. NBC_00879]
GTGCTGATACGACTACTGCGGACGCATTTGGGTCCGTACAGACAACCGATCACCCTCCTTGTGGTGCTGCAGCTGCTGCA
GACCAGCGCCACCCTTTACCTGCCGACCCTCAACGCGGACATCATCGACAACGGTGTGGTGAGGGGGAACACGGGCTACA
TCCTGCGGCTCGGCGCGCTCATGATCGCGGTGAGCATCGTGCAGGTGCTCTGCAACATCGGAGCTGTCTATATCGGCGCA
CAGACCGCCGCCGCGCTGGGGCGTGACGTCCGGGCCGCTGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGGTCGG
CCACTTCGGCGCGCCTTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTGCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTGGGCATCGCCGTCTCGCTGATCGTCAAGAAGATGCGGCCGCTGTTTCGGACCATGCA
GGAGCGTCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAATCGCGTCATCCGCGCCTTCGTCCGCGACG
AGTACGAGGCCGGACGCTTCCGCGGCGCCAACAACGAGCTGACCGATGTGTCCCTGTCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTAATGACGGTCGTGAACGTGTCGTCCATCGCCGTCGTCTGGTTCGGCGCACACCGGGTCGACAGCGG
CGCGATCCAGATCGGCGCGCTGACCGCGTTCCTGGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGGATCGAGGAGGTGCTGGACACTCACTCGAGCGTGATCCCG
CCGATCAAGGCCGTACGGGAGCTGCGCAGCCACGGGCATCTGGAGGTGCGGGCCGTGGAGTTCCGCTATCCGGGGGCCGA
GGAGTCGGTGCTGCGCGATGTCACCCTGCTGGCGCGGCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGTGGAA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGAGGTGCTCGTCGACGGCGTCGATGTGCGT
GACCTCGATCCGGGGCTGATGGCGAAGACGGTGGGGCTCGTGCCCCAGAGGCCGTATCTGTTCTCCGGGACCGTGGCCAC
CAATCTGCGCTACGGGAAGCCCGACGCGAGCGACGAGGAACTGTGGCAGGCGCTGGAGGTGGCACAGGCGGCCGACTTCG
TACGGGAACTCGAAGGCGGGCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGTGGTCAGCGCCAGCGCCTC
GCGATCGCGCGGACCCTGGTGCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCTGCCCTGGACTACGCCACCGA
CGCGGCGCTGCGAGGCGCGCTCGCCCGCGAGACCTCCGAGGCGACGGTCGTGATAGTCGCCCAGCGGGTGTCCACCATCC
GTGAGGCCGACCGCATCGTGGTGCTGGACGAGGGGCAGGTCGTGGGGACCGGAAGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGAGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404