Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OH805_RS25520 Genome accession   NZ_CP108799
Coordinates   5666701..5668623 (-) Length   640 a.a.
NCBI ID   WP_406402577.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00879     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5661701..5673623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH805_RS25505 (OH805_25480) - 5661884..5663146 (+) 1263 WP_324989691.1 FAD-dependent oxidoreductase -
  OH805_RS25510 (OH805_25485) dnaG 5663182..5665086 (+) 1905 WP_324989693.1 DNA primase -
  OH805_RS25515 (OH805_25490) - 5665264..5666445 (+) 1182 Protein_5031 RNA polymerase sigma factor -
  OH805_RS25520 (OH805_25495) rcrQ 5666701..5668623 (-) 1923 WP_406402577.1 ABC transporter ATP-binding protein Regulator
  OH805_RS25525 (OH805_25500) rcrP 5668620..5670353 (-) 1734 WP_406402579.1 ABC transporter ATP-binding protein Regulator
  OH805_RS25530 (OH805_25505) - 5670446..5671891 (-) 1446 WP_406305162.1 FGGY family carbohydrate kinase -
  OH805_RS25535 (OH805_25510) - 5671928..5672227 (-) 300 WP_324989785.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69404.65 Da        Isoelectric Point: 4.9972

>NTDB_id=666835 OH805_RS25520 WP_406402577.1 5666701..5668623(-) (rcrQ) [Streptomyces sp. NBC_00879]
MSGPGGRMMMGPVERSMDFKGSGKRLLRQLAPERMTLWVMLAAAVLSVAFNVLGPWILGRATDLVFAGVVGREMDAGTSK
EQAIDGLRDKDQGGLADLLSGVDFTPGDGIDFTAVGHVLLAALAVYVAAGLLMLVATRLSIRVINRTLYRMREDVQAKLS
RLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVVVATKVGKRS
QPHFVQQWKTTGKLNAHVEEMYTGHALVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAPSAERPERPQGRVSLEKV
AFRYEPDRPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRISLDGVDVAGMSREELRSQIGMVLQDTWL
FGGTIADNIAYGASREVSREEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGTHEELLAAEGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=666835 OH805_RS25520 WP_406402577.1 5666701..5668623(-) (rcrQ) [Streptomyces sp. NBC_00879]
ATGAGCGGGCCGGGCGGACGGATGATGATGGGCCCCGTCGAGCGGTCCATGGACTTCAAGGGTTCCGGCAAACGGCTGCT
GCGGCAGCTCGCGCCGGAGCGTATGACGCTGTGGGTGATGCTCGCGGCCGCTGTGCTGAGCGTCGCGTTCAACGTGCTCG
GTCCGTGGATTCTGGGCCGGGCGACCGACCTGGTCTTCGCCGGGGTCGTCGGCCGTGAGATGGACGCGGGGACGAGCAAG
GAGCAGGCGATCGACGGCCTGCGGGACAAGGACCAGGGCGGGCTCGCGGACCTTCTGTCCGGCGTGGACTTCACGCCCGG
CGACGGCATCGACTTCACCGCCGTCGGCCATGTGCTGCTGGCGGCGCTCGCGGTGTACGTGGCCGCGGGGCTGCTGATGC
TGGTGGCGACCCGGCTGTCGATCCGGGTGATCAACCGGACCCTGTACCGGATGCGCGAGGACGTACAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACCAACGACATCGACAACATCTC
GCAGACCCTGCAGCAGACGATGGGCCAGCTGATCAACTCGCTGCTGACCATCGTGGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTCGCGCTGGTGGCACTGGTGACGGTGCCGGTGTCGGTCGTCGTCGCGACGAAGGTCGGCAAGCGCTCG
CAGCCGCACTTCGTGCAGCAGTGGAAGACCACGGGCAAGCTCAACGCCCATGTCGAGGAGATGTACACCGGTCATGCGCT
GGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCCAGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGGGATTCA
AGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGTTCTTCGTCTCGAACCTCAACTATGTGCTGGTGGCCGTGGTC
GGCGGGCTGCGGGTCGCCTCAGGCGCGCTGTCGATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAACTCCTCG
ACGCAGAGGAGCAGGAGGCGGACGCGCCGTCCGCCGAGCGGCCCGAACGCCCGCAGGGCCGGGTGTCCCTGGAGAAGGTC
GCCTTCCGCTACGAGCCGGACAGGCCGCTCATCGAGAATCTGTCACTGAGCGTGGAGCCGGGTCACACGGTCGCGATCGT
CGGCCCGACGGGCGCGGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACGGGTGGGCGGATCAGCC
TCGACGGGGTCGACGTCGCCGGGATGTCCCGGGAGGAACTGCGGTCCCAGATAGGGATGGTGCTGCAGGACACGTGGCTG
TTCGGCGGCACGATCGCCGACAACATAGCGTACGGAGCCTCCCGGGAGGTGAGCCGCGAGGAGATCGAGGAGGCGGCGCG
CGCCGCGCACGCCGACCGGTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCTCGGGCGTGA
GCGCGGGCGAGAAGCAACTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAGGCGACC
AGCTCGGTGGACACCCGTACGGAGGTGCTCATCCAGAAGGCGATGGCACGGCTCGCCCACGGCCGCACGAGCTTCGTCAT
CGCGCACCGGCTCTCCACGATCCGGGATGCGGACGTGATCCTGGTGATGGAGAACGGGGCGATCGTCGAACAGGGCACGC
ATGAGGAGCTGTTGGCGGCGGAGGGGGCGTATGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTGGTGGAGGTGGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(38-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.87

96.406

0.384