Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG36_RS00010 Genome accession   NZ_CP094099
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245017024.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS00005 (MPG36_00005) dnaA 1..1368 (+) 1368 WP_245017023.1 chromosomal replication initiator protein DnaA -
  MPG36_RS00010 (MPG36_00010) comH 1589..3028 (+) 1440 WP_245017024.1 competence protein Machinery gene
  MPG36_RS00020 (MPG36_00020) - 3206..3958 (+) 753 WP_000767536.1 exodeoxyribonuclease III -
  MPG36_RS00025 (MPG36_00025) - 3955..4590 (-) 636 WP_015642211.1 outer membrane protein -
  MPG36_RS00030 (MPG36_00030) - 4594..4947 (-) 354 WP_154500198.1 hypothetical protein -
  MPG36_RS00035 (MPG36_00035) recG 5029..6894 (+) 1866 WP_245017025.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 55016.14 Da        Isoelectric Point: 7.0432

>NTDB_id=666828 MPG36_RS00010 WP_245017024.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe080]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNAPIQKPQNKPTSSQQPLQNFPYQESKLGSKNPKNSLLQPL
ATPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADINEHHESNENRDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQIEPTFYETNELAYSSTRKSEVKQNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCIKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666828 MPG36_RS00010 WP_245017024.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe080]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTAATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGTCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCTCACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAACCTCTTCAAAACTTTCCTTACCAAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAATCTCTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ATGAACACCACGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCACGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGAAAAGTTCATGGAGTTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTATCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.858

100

0.919