Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG76_RS07055 Genome accession   NZ_CP094098
Coordinates   1477399..1477680 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe081     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472399..1482680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS07035 (MPG76_07035) - 1473110..1474450 (-) 1341 WP_180622484.1 hypothetical protein -
  MPG76_RS07045 (MPG76_07045) comB4 1474771..1477134 (-) 2364 WP_245038337.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG76_RS07050 (MPG76_07050) comB3 1477136..1477399 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG76_RS07055 (MPG76_07055) comB2 1477399..1477680 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG76_RS07060 (MPG76_07060) - 1477826..1478653 (-) 828 WP_245038339.1 DUF5718 family protein -
  MPG76_RS07065 (MPG76_07065) - 1478744..1479796 (-) 1053 WP_245038341.1 MnmA/TRMU family protein -
  MPG76_RS07070 (MPG76_07070) dnaG 1479793..1481472 (-) 1680 WP_245038343.1 DNA primase -
  MPG76_RS07075 (MPG76_07075) groES 1481748..1482104 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666827 MPG76_RS07055 WP_001272686.1 1477399..1477680(-) (comB2) [Helicobacter pylori strain Hpfe081]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666827 MPG76_RS07055 WP_001272686.1 1477399..1477680(-) (comB2) [Helicobacter pylori strain Hpfe081]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989