Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG76_RS07050 Genome accession   NZ_CP094098
Coordinates   1477136..1477399 (-) Length   87 a.a.
NCBI ID   WP_000584955.1    Uniprot ID   K7YLH7
Organism   Helicobacter pylori strain Hpfe081     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472136..1482399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS07035 (MPG76_07035) - 1473110..1474450 (-) 1341 WP_180622484.1 hypothetical protein -
  MPG76_RS07045 (MPG76_07045) comB4 1474771..1477134 (-) 2364 WP_245038337.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG76_RS07050 (MPG76_07050) comB3 1477136..1477399 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG76_RS07055 (MPG76_07055) comB2 1477399..1477680 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG76_RS07060 (MPG76_07060) - 1477826..1478653 (-) 828 WP_245038339.1 DUF5718 family protein -
  MPG76_RS07065 (MPG76_07065) - 1478744..1479796 (-) 1053 WP_245038341.1 MnmA/TRMU family protein -
  MPG76_RS07070 (MPG76_07070) dnaG 1479793..1481472 (-) 1680 WP_245038343.1 DNA primase -
  MPG76_RS07075 (MPG76_07075) groES 1481748..1482104 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=666826 MPG76_RS07050 WP_000584955.1 1477136..1477399(-) (comB3) [Helicobacter pylori strain Hpfe081]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666826 MPG76_RS07050 WP_000584955.1 1477136..1477399(-) (comB3) [Helicobacter pylori strain Hpfe081]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YLH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977