Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG76_RS06920 Genome accession   NZ_CP094098
Coordinates   1444424..1445737 (-) Length   437 a.a.
NCBI ID   WP_245038294.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe081     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1439424..1450737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS06890 (MPG76_06890) nadC 1439887..1440708 (-) 822 WP_245038293.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG76_RS06895 (MPG76_06895) nadA 1440708..1441718 (-) 1011 WP_221003376.1 quinolinate synthase NadA -
  MPG76_RS06900 (MPG76_06900) - 1441708..1442511 (-) 804 WP_000561100.1 phosphatidylserine decarboxylase -
  MPG76_RS06905 (MPG76_06905) - 1442508..1443011 (-) 504 WP_000953101.1 hypothetical protein -
  MPG76_RS06910 (MPG76_06910) - 1443024..1443518 (-) 495 WP_000544981.1 hypothetical protein -
  MPG76_RS06915 (MPG76_06915) mqnP 1443511..1444395 (-) 885 WP_075645930.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG76_RS06920 (MPG76_06920) comEC/comE3 1444424..1445737 (-) 1314 WP_245038294.1 ComEC/Rec2 family competence protein Machinery gene
  MPG76_RS06925 (MPG76_06925) - 1445734..1447200 (-) 1467 WP_245038296.1 replicative DNA helicase -
  MPG76_RS06930 (MPG76_06930) - 1447211..1448605 (-) 1395 WP_245038298.1 NAD(P)H-hydrate dehydratase -
  MPG76_RS06935 (MPG76_06935) crdS 1448608..1449810 (-) 1203 WP_245039309.1 copper-sensing histidine kinase CrdS -
  MPG76_RS06940 (MPG76_06940) crdR 1449776..1450417 (-) 642 WP_180634607.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50146.21 Da        Isoelectric Point: 9.8515

>NTDB_id=666823 MPG76_RS06920 WP_245038294.1 1444424..1445737(-) (comEC/comE3) [Helicobacter pylori strain Hpfe081]
MKDKIFQGAFELLTTPKEYLLCGVVLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666823 MPG76_RS06920 WP_245038294.1 1444424..1445737(-) (comEC/comE3) [Helicobacter pylori strain Hpfe081]
TTGAAAGATAAAATTTTTCAGGGGGCGTTTGAACTTCTCACAACCCCCAAAGAATACTTGTTGTGTGGGGTTGTTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGTGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTGGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ACGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952