Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG76_RS02140 Genome accession   NZ_CP094098
Coordinates   453316..453702 (+) Length   128 a.a.
NCBI ID   WP_180428591.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 448316..458702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS02105 (MPG76_02105) - 448489..449427 (-) 939 WP_245038821.1 tetraacyldisaccharide 4'-kinase -
  MPG76_RS02110 (MPG76_02110) - 449424..450206 (-) 783 WP_220823347.1 NAD+ synthase -
  MPG76_RS02120 (MPG76_02120) ilvC 450455..451447 (+) 993 WP_212856678.1 ketol-acid reductoisomerase -
  MPG76_RS02125 (MPG76_02125) minD 451471..452277 (+) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG76_RS02130 (MPG76_02130) minE 452274..452507 (+) 234 WP_245038830.1 cell division topological specificity factor MinE -
  MPG76_RS02135 (MPG76_02135) dprA 452519..453319 (+) 801 WP_245038832.1 DNA-processing protein DprA Machinery gene
  MPG76_RS02140 (MPG76_02140) dprB 453316..453702 (+) 387 WP_180428591.1 Holliday junction resolvase RuvX Machinery gene
  MPG76_RS02145 (MPG76_02145) - 453855..454217 (+) 363 WP_245038834.1 tetratricopeptide repeat protein -
  MPG76_RS02150 (MPG76_02150) - 454403..454741 (+) 339 WP_000699916.1 hypothetical protein -
  MPG76_RS02155 (MPG76_02155) - 454725..455285 (+) 561 WP_245038836.1 hypothetical protein -
  MPG76_RS02160 (MPG76_02160) - 455296..455796 (+) 501 WP_245038838.1 glycoside hydrolase family protein -
  MPG76_RS07615 - 455816..455977 (+) 162 Protein_426 lysozyme -
  MPG76_RS02165 (MPG76_02165) - 456294..456680 (+) 387 WP_050835084.1 DUF1294 domain-containing protein -
  MPG76_RS02170 (MPG76_02170) - 456680..457465 (+) 786 WP_245038840.1 hypothetical protein -
  MPG76_RS02175 (MPG76_02175) - 457455..458558 (+) 1104 WP_245038842.1 hypothetical protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14513.97 Da        Isoelectric Point: 9.5678

>NTDB_id=666817 MPG76_RS02140 WP_180428591.1 453316..453702(+) (dprB) [Helicobacter pylori strain Hpfe081]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGK
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQ

Nucleotide


Download         Length: 387 bp        

>NTDB_id=666817 MPG76_RS02140 WP_180428591.1 453316..453702(+) (dprB) [Helicobacter pylori strain Hpfe081]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTAAGGGCAAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.094

100

0.961