Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG76_RS00705 Genome accession   NZ_CP094098
Coordinates   149094..149837 (+) Length   247 a.a.
NCBI ID   WP_245038526.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe081     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144094..154837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS00680 (MPG76_00680) panD 146246..146596 (+) 351 WP_245038525.1 aspartate 1-decarboxylase -
  MPG76_RS00685 (MPG76_00685) - 146607..146900 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG76_RS00690 (MPG76_00690) - 146900..147895 (+) 996 WP_245039231.1 PDZ domain-containing protein -
  MPG76_RS00695 (MPG76_00695) comB6 147901..148956 (+) 1056 WP_245039232.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG76_RS00700 (MPG76_00700) comB7 148972..149097 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG76_RS00705 (MPG76_00705) comB8 149094..149837 (+) 744 WP_245038526.1 virB8 family protein Machinery gene
  MPG76_RS00710 (MPG76_00710) comB9 149837..150799 (+) 963 WP_245038527.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG76_RS00715 (MPG76_00715) comB10 150792..151928 (+) 1137 WP_245038528.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG76_RS00720 (MPG76_00720) - 151998..153410 (+) 1413 WP_245038529.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG76_RS00725 (MPG76_00725) gmd 153424..154569 (+) 1146 WP_245038530.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28741.02 Da        Isoelectric Point: 8.9546

>NTDB_id=666811 MPG76_RS00705 WP_245038526.1 149094..149837(+) (comB8) [Helicobacter pylori strain Hpfe081]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
VPTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666811 MPG76_RS00705 WP_245038526.1 149094..149837(+) (comB8) [Helicobacter pylori strain Hpfe081]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAATAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAACTAGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GTACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972