Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG76_RS00010 Genome accession   NZ_CP094098
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_245038442.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe081     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS00005 (MPG76_00005) dnaA 1..1368 (+) 1368 WP_245038440.1 chromosomal replication initiator protein DnaA -
  MPG76_RS00010 (MPG76_00010) comH 1588..3021 (+) 1434 WP_245038442.1 competence protein Machinery gene
  MPG76_RS00020 (MPG76_00020) - 3199..3951 (+) 753 WP_245038444.1 exodeoxyribonuclease III -
  MPG76_RS00025 (MPG76_00025) - 3948..4583 (-) 636 WP_000668030.1 outer membrane protein -
  MPG76_RS00030 (MPG76_00030) - 4587..4940 (-) 354 WP_245038446.1 hypothetical protein -
  MPG76_RS00035 (MPG76_00035) recG 5022..6887 (+) 1866 WP_245038449.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54687.56 Da        Isoelectric Point: 7.9255

>NTDB_id=666807 MPG76_RS00010 WP_245038442.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe081]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPTQKPQNKPTSSQQSSQNFSYSESKLGSKNPKNSLLQPLAT
PSKISSANEVKTPTNNTKPPLRHSSKDQENNLFVTPPTEKTLPNNTPNADTNEHHESNENRDNVEKQTIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETNELAYSSTRKSEVKQNELNL
NDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666807 MPG76_RS00010 WP_245038442.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe081]
ATGAAAAAAACTCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAACTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTTCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCACCCACACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTTCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTAGCCACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACACCAACAAACAACACTAAACCCCCTTTAAGGCATTCTTCAAAAGA
TCAAGAAAACAACCTTTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTAATGAAC
ACCATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAATAG
AGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAATTTG
AATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.023

100

0.914