Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG69_RS07045 Genome accession   NZ_CP094096
Coordinates   1481343..1482656 (-) Length   437 a.a.
NCBI ID   WP_245055724.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe082     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476343..1487656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS07015 (MPG69_07015) nadC 1476806..1477627 (-) 822 WP_245055716.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG69_RS07020 (MPG69_07020) nadA 1477627..1478637 (-) 1011 WP_245055718.1 quinolinate synthase NadA -
  MPG69_RS07025 (MPG69_07025) - 1478627..1479430 (-) 804 WP_245056792.1 phosphatidylserine decarboxylase -
  MPG69_RS07030 (MPG69_07030) - 1479427..1479930 (-) 504 WP_245055720.1 helix-turn-helix domain-containing protein -
  MPG69_RS07035 (MPG69_07035) - 1479943..1480437 (-) 495 WP_000544981.1 hypothetical protein -
  MPG69_RS07040 (MPG69_07040) mqnP 1480430..1481314 (-) 885 WP_245055722.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG69_RS07045 (MPG69_07045) comEC/comE3 1481343..1482656 (-) 1314 WP_245055724.1 ComEC/Rec2 family competence protein Machinery gene
  MPG69_RS07050 (MPG69_07050) - 1482653..1484113 (-) 1461 WP_245055726.1 replicative DNA helicase -
  MPG69_RS07055 (MPG69_07055) - 1484124..1485524 (-) 1401 WP_245055728.1 NAD(P)H-hydrate dehydratase -
  MPG69_RS07060 (MPG69_07060) crdS 1485527..1486729 (-) 1203 WP_245056794.1 copper-sensing histidine kinase CrdS -
  MPG69_RS07065 (MPG69_07065) crdR 1486695..1487336 (-) 642 WP_245055730.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50116.09 Da        Isoelectric Point: 9.8515

>NTDB_id=666802 MPG69_RS07045 WP_245055724.1 1481343..1482656(-) (comEC/comE3) [Helicobacter pylori strain Hpfe082]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKIKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASMYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSASFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666802 MPG69_RS07045 WP_245055724.1 1481343..1482656(-) (comEC/comE3) [Helicobacter pylori strain Hpfe082]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAATTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCATGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGAGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95