Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OH805_RS08950 Genome accession   NZ_CP108799
Coordinates   2065121..2065906 (+) Length   261 a.a.
NCBI ID   WP_142213283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00879     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2060121..2070906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH805_RS08935 (OH805_08930) - 2060352..2060873 (+) 522 WP_406302655.1 TerD family protein -
  OH805_RS08940 (OH805_08935) - 2060950..2063847 (-) 2898 WP_406399205.1 vitamin B12-dependent ribonucleotide reductase -
  OH805_RS08945 (OH805_08940) nrdR 2064021..2064533 (-) 513 WP_266489153.1 transcriptional regulator NrdR -
  OH805_RS08950 (OH805_08945) dinR/lexA 2065121..2065906 (+) 786 WP_142213283.1 transcriptional repressor LexA Regulator
  OH805_RS08955 (OH805_08950) - 2066007..2068001 (-) 1995 WP_406399207.1 ATP-dependent DNA helicase -
  OH805_RS08960 (OH805_08955) - 2068051..2069868 (-) 1818 WP_406399209.1 IucA/IucC family protein -
  OH805_RS08965 (OH805_08960) - 2069968..2070705 (-) 738 WP_406399210.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28298.05 Da        Isoelectric Point: 8.0891

>NTDB_id=666795 OH805_RS08950 WP_142213283.1 2065121..2065906(+) (dinR/lexA) [Streptomyces sp. NBC_00879]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=666795 OH805_RS08950 WP_142213283.1 2065121..2065906(+) (dinR/lexA) [Streptomyces sp. NBC_00879]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACACCCGAGGGGCCCAAGCCCACGCGTTCGCTGCCCGGCCGACCTCCAGGGATCCGGGCCGACAGCT
CCGGTCTCACGGATCGGCAGCGGCGCGTCATCGAGGTGATCCGTGACTCCGTACAGCGTCGGGGATACCCGCCGTCGATG
CGTGAGATCGGCCAGGCGGTCGGGCTGTCCAGCACTTCCTCCGTGGCACACCAGCTCATGGCTCTGGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCAGGGCGTACGAGGTGCGCGGCTCCGACCAGCCCAGCACACAGCCGACGGACACGA
CCGGCAAGCCCGCCGCCTCGTATGTGCCGCTCGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAAGAGTCCGTC
GAGGACGTCTTCCCGCTGCCCCGCCAGCTTGTGGGTGACGGCGAGTTGTTCGTGCTGAAGGTCGTCGGAGACTCGATGAT
CGAGGCCGCGATCTGCGACGGCGACTGGGTGACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATTGTGGCCGCGA
TGCTGGACGGCGAAGCCACGGTCAAGCGCTTCAAGCGGGAGAATGGCCATGTGTGGCTCCTCCCGCACAACGCGGCGTAC
CAGCCGATTCCGGGTGATGAGGCGACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372