Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG69_RS00010 Genome accession   NZ_CP094096
Coordinates   1589..3025 (+) Length   478 a.a.
NCBI ID   WP_245055876.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe082     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS00005 (MPG69_00005) dnaA 1..1368 (+) 1368 WP_060758706.1 chromosomal replication initiator protein DnaA -
  MPG69_RS00010 (MPG69_00010) comH 1589..3025 (+) 1437 WP_245055876.1 competence protein Machinery gene
  MPG69_RS00020 (MPG69_00020) - 3206..3958 (+) 753 WP_180497177.1 exodeoxyribonuclease III -
  MPG69_RS00025 (MPG69_00025) - 3955..4590 (-) 636 WP_053576537.1 outer membrane protein -
  MPG69_RS00030 (MPG69_00030) - 4594..4941 (-) 348 WP_245055877.1 hypothetical protein -
  MPG69_RS00035 (MPG69_00035) recG 5023..6894 (+) 1872 WP_245055878.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54747.77 Da        Isoelectric Point: 7.6838

>NTDB_id=666787 MPG69_RS00010 WP_245055876.1 1589..3025(+) (comH) [Helicobacter pylori strain Hpfe082]
MKKTLCLSFFLTFSNPLQALVIKLLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQIPSLNAPIQKPQNKPTSSQQSLQNFSYSESKLGSKNPKNSLLQPLAT
PSKISSANEVKTPTNDTKPPLRHSSEDQENNLFVTPPTEKTLPNNTPNAGDTNEHHESNENRDNVEKQTIIDPNVKEFAC
GKWVYDDENLQAYRPSILKRVDENKQTATDITPCDYSNAENKSGKITTPYTKISVHKIEPLEEPQTFEAKNNFTILQARS
STEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETNELAYSSTRKSEVKQNELN
LNDKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=666787 MPG69_RS00010 WP_245055876.1 1589..3025(+) (comH) [Helicobacter pylori strain Hpfe082]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCAAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCACCACACAAAAAACTCACGCTCACTATTACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAATCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATACCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGCAGCAAT
CTCTTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTAGCCACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAGGCATTCTTCAGAAGA
TCAAGAGAACAACCTCTTTGTAACACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGGGGATACTAATG
AACACCATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAACGATTATAGATCCTAATGTTAAAGAATTTGCGTGC
GGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAAACAAACAGAC
TGCGACAGACATTACCCCTTGCGATTATAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCT
CTGTTCATAAAATAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGC
TCTACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAA
ACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAA
TAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAAT
TTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATTAAAGAAAGCAGTGAATA
TAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGAGTGTGCATGGTTTTAGAAATAGAAGAACAACCACGAGCCA
AAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

90.208

100

0.906