Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG47_RS06920 Genome accession   NZ_CP094095
Coordinates   1445740..1447053 (-) Length   437 a.a.
NCBI ID   WP_245016097.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe083     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440740..1452053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG47_RS06890 (MPG47_06890) nadC 1441203..1442024 (-) 822 WP_245016091.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG47_RS06895 (MPG47_06895) nadA 1442024..1443034 (-) 1011 WP_245016092.1 quinolinate synthase NadA -
  MPG47_RS06900 (MPG47_06900) - 1443024..1443827 (-) 804 WP_245016093.1 phosphatidylserine decarboxylase -
  MPG47_RS06905 (MPG47_06905) - 1443824..1444327 (-) 504 WP_245016094.1 helix-turn-helix domain-containing protein -
  MPG47_RS06910 (MPG47_06910) - 1444340..1444834 (-) 495 WP_245016095.1 hypothetical protein -
  MPG47_RS06915 (MPG47_06915) mqnP 1444827..1445711 (-) 885 WP_245016096.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG47_RS06920 (MPG47_06920) comEC/comE3 1445740..1447053 (-) 1314 WP_245016097.1 ComEC/Rec2 family competence protein Machinery gene
  MPG47_RS06925 (MPG47_06925) - 1447050..1448510 (-) 1461 WP_245016098.1 replicative DNA helicase -
  MPG47_RS06930 (MPG47_06930) - 1448521..1449915 (-) 1395 WP_245016099.1 NAD(P)H-hydrate dehydratase -
  MPG47_RS06935 (MPG47_06935) crdS 1449918..1451120 (-) 1203 WP_245016597.1 copper-sensing histidine kinase CrdS -
  MPG47_RS06940 (MPG47_06940) crdR 1451086..1451727 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50056.95 Da        Isoelectric Point: 9.9068

>NTDB_id=666782 MPG47_RS06920 WP_245016097.1 1445740..1447053(-) (comEC/comE3) [Helicobacter pylori strain Hpfe083]
MKDKTFQGAFELLATPKEYLLCGAILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYSPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQIISLS
TLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666782 MPG47_RS06920 WP_245016097.1 1445740..1447053(-) (comEC/comE3) [Helicobacter pylori strain Hpfe083]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGCTATTTTAAG
CCTTTTGTTGGCGTTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCACTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCACTAGGGATCAACCATTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTCCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGATCATAAGCTTAAGC
ACGCTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTAGATAGCA
TTTTAAACATGCCTTTAACAATCCCCACAATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947