Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG47_RS05425 Genome accession   NZ_CP094095
Coordinates   1139076..1139480 (-) Length   134 a.a.
NCBI ID   WP_245015925.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134076..1144480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG47_RS05385 (MPG47_05385) - 1134197..1135285 (-) 1089 WP_245015920.1 hypothetical protein -
  MPG47_RS05390 (MPG47_05390) - 1135275..1136060 (-) 786 WP_245015921.1 hypothetical protein -
  MPG47_RS05395 (MPG47_05395) - 1136060..1136442 (-) 383 Protein_1052 DUF1294 domain-containing protein -
  MPG47_RS05400 (MPG47_05400) - 1136593..1136766 (-) 174 WP_180646814.1 hypothetical protein -
  MPG47_RS05405 (MPG47_05405) - 1136778..1137398 (-) 621 WP_245015922.1 lysozyme -
  MPG47_RS05410 (MPG47_05410) - 1137409..1137969 (-) 561 WP_245015923.1 hypothetical protein -
  MPG47_RS05415 (MPG47_05415) - 1137953..1138291 (-) 339 WP_000699916.1 hypothetical protein -
  MPG47_RS05420 (MPG47_05420) - 1138481..1138945 (-) 465 WP_245015924.1 tetratricopeptide repeat protein -
  MPG47_RS05425 (MPG47_05425) dprB 1139076..1139480 (-) 405 WP_245015925.1 Holliday junction resolvase RuvX Machinery gene
  MPG47_RS05430 (MPG47_05430) dprA 1139477..1140277 (-) 801 WP_245015926.1 DNA-processing protein DprA Machinery gene
  MPG47_RS05435 (MPG47_05435) minE 1140289..1140522 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG47_RS05440 (MPG47_05440) minD 1140519..1141325 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG47_RS05445 (MPG47_05445) ilvC 1141344..1142336 (-) 993 WP_245015927.1 ketol-acid reductoisomerase -
  MPG47_RS05455 (MPG47_05455) - 1142585..1143367 (+) 783 WP_245015928.1 NAD+ synthase -
  MPG47_RS05460 (MPG47_05460) - 1143364..1144302 (+) 939 WP_245015929.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15220.75 Da        Isoelectric Point: 7.6414

>NTDB_id=666778 MPG47_RS05425 WP_245015925.1 1139076..1139480(-) (dprB) [Helicobacter pylori strain Hpfe083]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNACIEYFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666778 MPG47_RS05425 WP_245015925.1 1139076..1139480(-) (dprB) [Helicobacter pylori strain Hpfe083]
GTGATTTTGGCATGCGATGTGGGCTTAAAACGCATTGGGATCGCTATGCTTTTGAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGTGCATTGAATATTTCATCAAGCTTTTAGATTTTAAGGGTGAA
ATCGTTTTTATCAATGAAGATAGATCCAGCATAGAAGCCTGTGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94