Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG47_RS00010 Genome accession   NZ_CP094095
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_245016164.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe083     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG47_RS00005 (MPG47_00005) dnaA 1..1368 (+) 1368 WP_180532815.1 chromosomal replication initiator protein DnaA -
  MPG47_RS00010 (MPG47_00010) comH 1588..3021 (+) 1434 WP_245016164.1 competence protein Machinery gene
  MPG47_RS00020 (MPG47_00020) - 3199..3951 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  MPG47_RS00025 (MPG47_00025) - 3948..4583 (-) 636 WP_000668030.1 outer membrane protein -
  MPG47_RS00030 (MPG47_00030) - 4587..4940 (-) 354 WP_000836998.1 hypothetical protein -
  MPG47_RS00035 (MPG47_00035) recG 5022..6887 (+) 1866 WP_245016165.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54681.67 Da        Isoelectric Point: 7.0430

>NTDB_id=666766 MPG47_RS00010 WP_245016164.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe083]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIIYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKESHQMPSLNAPIQKPQNKPTSSQQSLQNFSYPESKLSSKNPKNSLLQPLAT
PSKISSVNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNADINEHHESNENRDNGEKQAIKDPNIKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAESKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666766 MPG47_RS00010 WP_245016164.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe083]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTATCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACCCAGAGTCCAAACTAAGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAGTAAAATAAGCTCCGTTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTTTTCATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACCATGAAAGTAATGAAAATAGGGATAATGGGGAAAAACAAGCGATTAAAGATCCTAATATCAAAGAATTTGCATGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATCACCCCTTGCGATTACAGCAATGCTGAAAGTAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATTTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAACGCCCCAAACAAGACGATCAAATAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.276

100

0.927