Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG19_RS07415 Genome accession   NZ_CP094094
Coordinates   1534527..1534808 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe084     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529527..1539808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG19_RS07395 (MPG19_07395) - 1530240..1531670 (-) 1431 WP_162972184.1 COG3014 family protein -
  MPG19_RS07405 (MPG19_07405) comB4 1531899..1534262 (-) 2364 WP_245066122.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG19_RS07410 (MPG19_07410) comB3 1534264..1534527 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG19_RS07415 (MPG19_07415) comB2 1534527..1534808 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG19_RS07420 (MPG19_07420) - 1534953..1535780 (-) 828 WP_231165618.1 DUF5718 family protein -
  MPG19_RS07425 (MPG19_07425) - 1535871..1536923 (-) 1053 WP_245066123.1 MnmA/TRMU family protein -
  MPG19_RS07430 (MPG19_07430) dnaG 1536920..1538599 (-) 1680 WP_245066124.1 DNA primase -
  MPG19_RS07435 (MPG19_07435) groES 1538875..1539231 (+) 357 WP_033767138.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666765 MPG19_RS07415 WP_001272686.1 1534527..1534808(-) (comB2) [Helicobacter pylori strain Hpfe084]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666765 MPG19_RS07415 WP_001272686.1 1534527..1534808(-) (comB2) [Helicobacter pylori strain Hpfe084]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGTGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989