Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG19_RS07410 Genome accession   NZ_CP094094
Coordinates   1534264..1534527 (-) Length   87 a.a.
NCBI ID   WP_000584970.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe084     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529264..1539527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG19_RS07395 (MPG19_07395) - 1530240..1531670 (-) 1431 WP_162972184.1 COG3014 family protein -
  MPG19_RS07405 (MPG19_07405) comB4 1531899..1534262 (-) 2364 WP_245066122.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG19_RS07410 (MPG19_07410) comB3 1534264..1534527 (-) 264 WP_000584970.1 hypothetical protein Machinery gene
  MPG19_RS07415 (MPG19_07415) comB2 1534527..1534808 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG19_RS07420 (MPG19_07420) - 1534953..1535780 (-) 828 WP_231165618.1 DUF5718 family protein -
  MPG19_RS07425 (MPG19_07425) - 1535871..1536923 (-) 1053 WP_245066123.1 MnmA/TRMU family protein -
  MPG19_RS07430 (MPG19_07430) dnaG 1536920..1538599 (-) 1680 WP_245066124.1 DNA primase -
  MPG19_RS07435 (MPG19_07435) groES 1538875..1539231 (+) 357 WP_033767138.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.16 Da        Isoelectric Point: 9.5290

>NTDB_id=666764 MPG19_RS07410 WP_000584970.1 1534264..1534527(-) (comB3) [Helicobacter pylori strain Hpfe084]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666764 MPG19_RS07410 WP_000584970.1 1534264..1534527(-) (comB3) [Helicobacter pylori strain Hpfe084]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977