Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG19_RS07290 Genome accession   NZ_CP094094
Coordinates   1506620..1507933 (-) Length   437 a.a.
NCBI ID   WP_245066110.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe084     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501620..1512933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG19_RS07260 (MPG19_07260) nadC 1502083..1502904 (-) 822 WP_245066107.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG19_RS07265 (MPG19_07265) nadA 1502904..1503914 (-) 1011 WP_245066108.1 quinolinate synthase NadA -
  MPG19_RS07270 (MPG19_07270) - 1503904..1504707 (-) 804 WP_245066109.1 phosphatidylserine decarboxylase -
  MPG19_RS07275 (MPG19_07275) - 1504704..1505207 (-) 504 WP_000953083.1 hypothetical protein -
  MPG19_RS07280 (MPG19_07280) - 1505220..1505714 (-) 495 WP_014537179.1 hypothetical protein -
  MPG19_RS07285 (MPG19_07285) mqnP 1505707..1506591 (-) 885 WP_231265659.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG19_RS07290 (MPG19_07290) comEC/comE3 1506620..1507933 (-) 1314 WP_245066110.1 ComEC/Rec2 family competence protein Machinery gene
  MPG19_RS07295 (MPG19_07295) - 1507930..1509396 (-) 1467 WP_245066111.1 replicative DNA helicase -
  MPG19_RS07300 (MPG19_07300) - 1509407..1510801 (-) 1395 WP_245066112.1 NAD(P)H-hydrate dehydratase -
  MPG19_RS07305 (MPG19_07305) crdS 1510804..1512006 (-) 1203 WP_245067106.1 copper-sensing histidine kinase CrdS -
  MPG19_RS07310 (MPG19_07310) crdR 1511972..1512613 (-) 642 WP_245066113.1 copper response regulator transcription factor CrdR -
  MPG19_RS07315 (MPG19_07315) - 1512701..1512925 (-) 225 Protein_1430 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49950.86 Da        Isoelectric Point: 9.8840

>NTDB_id=666761 MPG19_RS07290 WP_245066110.1 1506620..1507933(-) (comEC/comE3) [Helicobacter pylori strain Hpfe084]
MKDKTFQGAFELLATPKEYLLYGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
TLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLMIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666761 MPG19_RS07290 WP_245066110.1 1506620..1507933(-) (comEC/comE3) [Helicobacter pylori strain Hpfe084]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGCTGTATGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCCCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGATTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTAGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGCACGATCTTTTCAAGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943